CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87993
EER89265
EER99683
EES13318
KXG40039
OQU79846
OQU91278

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	KXG40039	AT1G02580.1	15456723
AT2G35670.1	KXG40039	AT1G02580.1	16924116
AT2G35670.1	EER89265	AT2G23380.1	15456723
AT2G35670.1	EER89265	AT2G23380.1	16924116
AT2G35670.1	KXG40039	AT4G02020.1	15456723
AT2G35670.1	KXG40039	AT4G02020.1	16924116
AT4G16845.1	EER89265	AT2G23380.1	15456723
AT4G16845.1	KXG40039	AT4G02020.1	15456723
AT5G51230.1	EER87993	AT1G30530.1	23778966
AT5G51230.1	EER99683	AT1G30530.1	23778966
AT5G51230.1	EER89265	AT2G23380.1	15456723
AT5G51230.1	EES13318	AT3G20740.1	23778966
AT5G51230.1	OQU79846	AT3G20740.1	23778966
AT5G51230.1	KXG40039	AT4G02020.1	15456723
AT5G51230.1	KXG40039	AT4G02020.1	23778966
AT5G51230.1	OQU91278	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os09t0306800-01	Rice	cytosol, nucleus	80.03	79.37
OQU89244	Sorghum	nucleus	80.7	77.35
VIT_00s1675g00010.t01	Wine grape	cytosol	15.81	76.61
TraesCS5A01G179600.1	Wheat	nucleus	80.03	75.39
TraesCS5D01G184200.2	Wheat	nucleus	79.87	75.24
HORVU5Hr1G054730.1	Barley	nucleus	79.7	75.2
TraesCS5B01G177400.2	Wheat	nucleus	80.2	73.36
TraesCS2D01G000600.1	Wheat	cytosol	73.38	73.13
TraesCS2B01G023900.1	Wheat	cytosol	72.71	72.83
HORVU2Hr1G000010.32	Barley	nucleus	73.38	72.77
TraesCS2A01G000100.1	Wheat	nucleus	72.88	72.52
TraesCSU01G075500.1	Wheat	nucleus	37.44	70.53
TraesCS3B01G073800.1	Wheat	nucleus	26.79	62.89
KXG25810	Sorghum	nucleus	54.24	53.8
GSMUA_Achr4P29640_001	Banana	nucleus	57.4	52.11
VIT_02s0234g00050.t01	Wine grape	nucleus	32.61	51.99
KRH28171	Soybean	nucleus	35.44	50.12
VIT_16s0013g00860.t01	Wine grape	nucleus	55.07	50.0
KRH77315	Soybean	nucleus	35.11	49.3
Solyc03g093640.2.1	Tomato	nucleus	51.91	48.9
GSMUA_Achr2P11170_001	Banana	nucleus	55.74	48.55
CDY43476	Canola	nucleus	11.98	48.32
AT5G51230.1	Thale cress	nucleus	50.58	48.18
CDX99960	Canola	nucleus	49.58	47.15
CDY00460	Canola	nucleus, plastid	49.58	47.15
Bra015200.1-P	Field mustard	nucleus, plastid	49.58	47.15
CDX91573	Canola	nucleus	49.42	47.14
CDY16330	Canola	nucleus	49.42	46.99
Bra022541.1-P	Field mustard	nucleus	49.42	46.99
KRH33365	Soybean	nucleus	46.09	45.56
KRG90126	Soybean	nucleus	45.42	44.9
CDY00458	Canola	cytosol	24.63	43.02
Bra015201.1-P	Field mustard	cytosol	24.46	42.73
TraesCS4D01G183300.1	Wheat	nucleus	8.65	40.62
CDY71414	Canola	nucleus	26.79	40.05
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	14.81	38.36
TraesCS5D01G388900.1	Wheat	nucleus	8.15	38.28
CDX76587	Canola	nucleus	26.62	37.83
AT4G16845.1	Thale cress	nucleus	27.62	37.73
Bra021078.1-P	Field mustard	nucleus	26.46	37.41
CDX84180	Canola	cytosol	10.65	29.22
Bra005316.1-P	Field mustard	nucleus	10.48	26.58
Bra040097.1-P	Field mustard	nucleus	19.97	25.81
CDY42943	Canola	nucleus	19.97	25.81
CDY35632	Canola	cytosol	19.13	25.44
CDY33160	Canola	nucleus	17.3	22.61
KRH34601	Soybean	nucleus	28.45	21.81
CDY31712	Canola	nucleus	12.65	21.78
CDX75032	Canola	mitochondrion, nucleus	12.98	20.42
Bra005262.1-P	Field mustard	mitochondrion	12.98	20.42
Bra029179.1-P	Field mustard	nucleus	28.45	19.79
CDY38857	Canola	nucleus	24.46	19.76
CDX84179	Canola	cytosol	13.14	19.36
AT4G16810.1	Thale cress	nucleus	8.65	17.33
AT2G35670.1	Thale cress	nucleus	17.64	14.04

Protein Annotations

EnsemblPlants:KXG37542	EnsemblPlantsGene:SORBI_3001G087600	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	PFAM:PF09733
ProteinID:KXG37542	ProteinID:KXG37542.1	SEG:seg	UniParc:UPI00081ABB7F	UniProt:A0A1B6QHZ0	MapMan:12.3.3.1.1.3
MapMan:15.5.15	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6791907..6803470

Molecular Weight (calculated)

68098.7 Da

IEP (calculated)

7.042

GRAVY (calculated)

-0.400

Length

601 amino acids

Sequence
(BLAST)

001: MCLQHSRARL SPDEQLAAER SFALYCKPIE LYNIIQRRAV KNPPFIQRSL LYKIQARRKK RIQITVSLSA SANTQAPNIF PLHVLLARPT SNISLEGHSP
101: IYRFSRVCLL TNFSEFGNKG KTEATFIIPD VKNLSTSRAC NLNIILISCG QVGQIIGEDS CSGNDVERSS LQKLEGKCSW GKIPTNVLAS SLEKCVTLST
201: GDAVDLASTV TMSPSFLEPK FLEQDSCLTF CSHKVDATGS YQLEVCISAE EAGARELLLS PYYCNYSYDN VPPSLLPEII RLRAGNVLFN YKYYNNTMQK
301: TEVTEDFSCP FCLVPCGSFK GLGCHLNSSH DLFHYEFWIS EECQAVNVSL KADAWKTESV AEGVDPRHQT FSYCSRFKKR RRLETTAEKF RHVHPHIMES
401: GSHEDAQAGS EDDYAQRENG LSVAHAAVDP SQPVHGSNLS LPTVLQFGKS RKLSIERSDP RNRQLLQKRQ FFHSHRAQPM PLEQVFSDHD SEDEVDDDIA
501: DFEDRRMLDD FVDVTKDEKL IMHMWNSFVR KQRVLADGHI PWACEAFSRC HGQQLVQNPA LLWGWRFFMI KLWNHSLLDA RAMNTCNTIL QGYQDGSSDP
601: K

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.