CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88587
KRH02903
KRH10620
KRH18985
KRH21732
KRH22237
KRH27099
KRH28444
KRH31935
KRH42070
KRH42369
KRH49847
KRH49848
KRH49849
KRH55397
KRH58491
KRH71526
KRH77020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51230.1	KRG88587	AT1G30530.1	23778966
AT5G51230.1	KRH02903	AT1G30530.1	23778966
AT5G51230.1	KRH10620	AT1G30530.1	23778966
AT5G51230.1	KRH18985	AT1G30530.1	23778966
AT5G51230.1	KRH21732	AT1G30530.1	23778966
AT5G51230.1	KRH42070	AT1G30530.1	23778966
AT5G51230.1	KRH49847	AT1G30530.1	23778966
AT5G51230.1	KRH49848	AT1G30530.1	23778966
AT5G51230.1	KRH49849	AT1G30530.1	23778966
AT5G51230.1	KRH55397	AT1G30530.1	23778966
AT5G51230.1	KRH28444	AT2G23380.1	15456723
AT5G51230.1	KRH77020	AT2G23380.1	15456723
AT5G51230.1	KRH22237	AT3G20740.1	23778966
AT5G51230.1	KRH27099	AT3G20740.1	23778966
AT5G51230.1	KRH31935	AT3G20740.1	23778966
AT5G51230.1	KRH71526	AT3G20740.1	23778966
AT5G51230.1	KRH42369	AT5G58230.1	23778966
AT5G51230.1	KRH58491	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH33365	Soybean	nucleus	92.76	92.76
VIT_00s1675g00010.t01	Wine grape	cytosol	14.31	70.16
TraesCSU01G194400.1	Wheat	nucleus	13.82	67.74
TraesCSU01G224600.1	Wheat	nucleus	13.82	67.74
Bra015200.1-P	Field mustard	nucleus, plastid	55.43	53.32
CDY00460	Canola	nucleus, plastid	55.43	53.32
AT5G51230.1	Thale cress	nucleus	55.26	53.25
GSMUA_Achr2P11140_001	Banana	cytosol	9.7	53.15
Solyc03g093640.2.1	Tomato	nucleus	55.59	52.98
CDX99960	Canola	nucleus	54.93	52.85
VIT_02s0234g00050.t01	Wine grape	nucleus	31.41	50.66
CDX91573	Canola	nucleus	52.47	50.63
CDY16330	Canola	nucleus	52.3	50.32
Bra022541.1-P	Field mustard	nucleus	52.3	50.32
KRH77315	Soybean	nucleus	35.36	50.23
KRH28171	Soybean	nucleus	35.03	50.12
Os09t0306800-01	Rice	cytosol, nucleus	45.56	45.71
KXG37542	Sorghum	nucleus	44.9	45.42
TraesCS2B01G023900.1	Wheat	cytosol	44.74	45.33
HORVU5Hr1G054730.1	Barley	nucleus	47.37	45.21
TraesCS2A01G000100.1	Wheat	nucleus	44.74	45.03
TraesCS2D01G000600.1	Wheat	cytosol	44.57	44.94
TraesCS5A01G179600.1	Wheat	nucleus	46.88	44.67
TraesCS5D01G184200.2	Wheat	nucleus	46.71	44.51
HORVU2Hr1G000010.32	Barley	nucleus	43.91	44.06
TraesCS5B01G177400.2	Wheat	nucleus	46.88	43.38
OQU89244	Sorghum	nucleus	44.24	42.9
Zm00001d034036_P003	Maize	golgi	41.94	41.87
Zm00001d020036_P002	Maize	nucleus	43.75	38.83
Os04t0162100-01	Rice	nucleus	38.16	37.18
KXG25810	Sorghum	nucleus	35.36	35.48
TraesCS2A01G002500.1	Wheat	nucleus	37.66	35.34
TraesCS2B01G020400.3	Wheat	nucleus	37.01	35.05
HORVU2Hr1G000390.20	Barley	nucleus	37.5	34.49
TraesCS4D01G183300.1	Wheat	nucleus	6.74	32.03
TraesCS5D01G388900.1	Wheat	nucleus	6.58	31.25
TraesCS3B01G073800.1	Wheat	nucleus	12.83	30.47
KRH34601	Soybean	nucleus	34.7	26.91
CDY38857	Canola	nucleus	26.97	22.04
Bra029179.1-P	Field mustard	nucleus	31.25	21.99

Protein Annotations

EntrezGene:100815591	MapMan:12.3.3.1.1.3	MapMan:15.5.15	EMBL:ACUP02012553	EnsemblPlantsGene:GLYMA_20G069800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003682	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0031490	UniProt:K7N203	EnsemblPlants:KRG90126	ProteinID:KRG90126
ProteinID:KRG90126.1	PFAM:PF09733	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	InterPro:Polycomb_protein_VEFS-Box	UniParc:UPI000233DCD0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:24812127..24837050

Molecular Weight (calculated)

68947.7 Da

IEP (calculated)

6.629

GRAVY (calculated)

-0.381

Length

608 amino acids

Sequence
(BLAST)

001: MPGIPVSTRA TSSHPDACEH LSAEEELAAE ESLSIYCKPV ELYNILQRRA MRNPSFLQRC LHYRIKAKHK KRIHMAVSLT RTITESQNVF PMSICLARRI
101: SDHGASRQTA MYRIGRIFIF RNSPGIDLNT QVQANFTLPE VNKLAEEARS CSLDILFVST ATVGNSHLSS GVNSNSMPSD LSHLAFFESG EYCLCGKVSL
201: ESLYMAWDCF PNFRLGQRAE IMSTVDLLPC ILKSDFPNDD TRISIQVPSN FENMSTSKQV QITISAEEFG AKEKSPYLSY AGSEVPSSSL SHMIGLREGN
301: VMFNYRYYNN KLQRTEVTED FTCPFCLVKC ACFKGLRCHL SSSHDLFNFE FWVSDECHAV NVSVKNDISR SEIVSDDVDP RVQTFFFCGK PLKRRTTADQ
401: SLKNAVGLES SFPAGGTDIL EKDDGISATI IRSRPDRDSV QSMSDCDQAV LQFAKTRKLS IERPDPRNST FLRKRQFFHS HKAQPMAIEQ VLSDKDSEDE
501: VDDDVADFED RRMLENVVDV SNDEKTFMHM WNSFVRKHRV IADGHISWAC EAFSKLHAPE FVQSPSLAGC WRIFMVKLYN HGLLDARTMN DCNIILEQYQ
601: RQNSDPKS

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.