CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90126
KRH22237
KRH27099
KRH28171
KRH31935
KRH33365
KRH34601
KRH42369
KRH58491
KRH71526
KRH77315

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23380.1	KRH28171	AT2G35670.1	15456723
AT2G23380.1	KRH77315	AT2G35670.1	15456723
AT2G23380.1	KRH22237	AT3G20740.1	14871310
AT2G23380.1	KRH27099	AT3G20740.1	14871310
AT2G23380.1	KRH31935	AT3G20740.1	14871310
AT2G23380.1	KRH71526	AT3G20740.1	14871310
AT2G23380.1	KRH22237	AT3G20740.1	15456723
AT2G23380.1	KRH27099	AT3G20740.1	15456723
AT2G23380.1	KRH31935	AT3G20740.1	15456723
AT2G23380.1	KRH71526	AT3G20740.1	15456723
AT2G23380.1	KRH22237	AT3G20740.1	18812497
AT2G23380.1	KRH27099	AT3G20740.1	18812497
AT2G23380.1	KRH31935	AT3G20740.1	18812497
AT2G23380.1	KRH71526	AT3G20740.1	18812497
AT2G23380.1	KRH28171	AT4G16845.1	15456723
AT2G23380.1	KRH77315	AT4G16845.1	15456723
AT2G23380.1	KRG90126	AT5G51230.1	15456723
AT2G23380.1	KRH33365	AT5G51230.1	15456723
AT2G23380.1	KRH34601	AT5G51230.1	15456723
AT2G23380.1	KRH42369	AT5G58230.1	23778966
AT2G23380.1	KRH58491	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28444	Soybean	nucleus	97.33	97.33
VIT_07s0031g00320.t01	Wine grape	nucleus	70.62	69.64
GSMUA_AchrUn_...	Banana	nucleus	58.77	65.63
AT2G23380.1	Thale cress	nucleus	64.23	61.31
PGSC0003DMT400084490	Potato	nucleus	65.62	61.28
Solyc03g044380.2.1	Tomato	nucleus	64.92	60.69
CDY38942	Canola	nucleus, plastid	63.53	60.31
Bra032169.1-P	Field mustard	nucleus, plastid	63.41	60.2
CDX89569	Canola	nucleus, plastid	63.07	59.67
Os06t0275500-01	Rice	nucleus	61.32	58.93
TraesCS7D01G127100.2	Wheat	nucleus	60.05	58.29
TraesCS7B01G028200.2	Wheat	nucleus	60.05	58.29
TraesCS7A01G128300.1	Wheat	nucleus	60.05	58.29
EER89265	Sorghum	plastid	62.02	57.23
HORVU7Hr1G026840.1	Barley	cytosol, mitochondrion, nucleus	59.93	56.15
Zm00001d036296_P004	Maize	nucleus, plastid	60.51	52.95
PGSC0003DMT400010235	Potato	nucleus	48.43	50.92
TraesCS7B01G028500.2	Wheat	nucleus	47.39	50.87
TraesCS7D01G127400.1	Wheat	nucleus	46.81	50.25
HORVU7Hr1G026910.29	Barley	cytosol, nucleus	45.64	49.94
TraesCS7A01G128600.1	Wheat	nucleus	46.34	49.81
KRH31789	Soybean	nucleus	46.92	46.44
KRH69214	Soybean	nucleus	46.81	46.43
KRG96530	Soybean	cytosol, nucleus	34.49	43.81
KRH28654	Soybean	nucleus	33.91	41.71
KRH68267	Soybean	nucleus	35.19	40.73
KRH68336	Soybean	nucleus	36.47	38.57
KRH75137	Soybean	cytosol	2.56	17.32
KRH38763	Soybean	cytosol	6.74	16.62
KRH09264	Soybean	nucleus	6.62	16.33
KRH54981	Soybean	plastid	9.29	15.21
KRH35109	Soybean	nucleus	7.67	13.75
KRG91687	Soybean	nucleus	7.9	13.71
KRG94193	Soybean	cytosol, nucleus	8.25	13.37
KRH53486	Soybean	nucleus	14.05	11.34
KRH64461	Soybean	nucleus	13.82	11.23
KRH47912	Soybean	nucleus	12.08	10.52
KRG96460	Soybean	cytosol, mitochondrion, nucleus, plastid	11.96	10.45
KRH68208	Soybean	nucleus	11.85	10.38
KRH06474	Soybean	nucleus	11.61	10.13
KRH01524	Soybean	nucleus	12.54	9.93
KRH45215	Soybean	nucleus	12.54	9.93
KRG94170	Soybean	nucleus	4.3	7.77
KRH12193	Soybean	nucleus	10.69	7.5
KRH37214	Soybean	nucleus	10.1	7.09
KRH05241	Soybean	nucleus	13.12	5.56
KRH15817	Soybean	nucleus	12.78	5.48
KRH64610	Soybean	nucleus	11.27	4.65
KRH53306	Soybean	nucleus	10.92	4.61

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100799832	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10	EMBL:ACUP02000652
InterPro:CXC_dom	ncoils:Coil	EnsemblPlantsGene:GLYMA_01G188000	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003727	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006349	GO:GO:0006464
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009294	GO:GO:0009653
GO:GO:0009791	GO:GO:0009965	GO:GO:0009987	GO:GO:0010228	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0031519	GO:GO:0032259	GO:GO:0034968	GO:GO:0040029
GO:GO:0045857	InterPro:Hist-Lys_N-MeTrfase_EZ	UniProt:I1J986	InterPro:IPR001214	InterPro:IPR025778	InterPro:IPR026489
EnsemblPlants:KRH77020	ProteinID:KRH77020	ProteinID:KRH77020.1	PFAM:PF00856	PFscan:PS50280	PFscan:PS51576
PFscan:PS51633	PANTHER:PTHR22884	PANTHER:PTHR22884:SF237	InterPro:SET_dom	SMART:SM00317	SMART:SM01114
SUPFAM:SSF82199	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI000294F5BD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:52299950..52309953

Molecular Weight (calculated)

96320.4 Da

IEP (calculated)

8.436

GRAVY (calculated)

-0.787

Length

861 amino acids

Sequence
(BLAST)

001: MASKPSPSPS PSSSRSEPLV DPSANKVEGS SPTAKDVLLV IDSLKKQVAA ERVVYVKKRI EENRQKLVGV TNHLCTMSTE RRNCSITDTN RSLDLLTKRQ
101: KDAIDMHNGV HASNGDVESN GYHDDNHGST AVLLGSNVAV KNAVRPIKLP EVKKLPPYTT WIFLDRNQRM TEDQSVVGRR RIYYDQNGGE ALICSDSEEE
201: TMDDEEEKRE FIESEDYILR MTVKEFGLTD IVLESLAQCF SRNTSEIKAK YETLSIHDNA GGCSKAGDSE ENSQSGNFFL EKDLEAALDS FDNLFCRRCL
301: VFDCRLHGCS QDLVFPAEKQ PTWNPPDTEN APCGPNCFRS VLKSERFAKT SSAQADEEKS SGGALSRKKS SAKRRIKCSQ SESASSNAKN ISESSDSENG
401: PGRDAVSASR SAPPKTKPVG KGGIGKRNSK RVAERVLVCM QKRQKKTMVS DSDSISEALD RSSNDMVTDP HAMSSEDNMR KEEFVDDNVC KPEITDNKSW
501: KALEKGLLEK GMEIFGRNSC LIARNLLNGL KTCWDVFQYI NCEDGKMSGP PGDVANSLMD CYSKGTNEVR RRSRFLRRRG RVRRLKYTWK SAAYHSIRKR
601: ITERKDQPCR QYNPCGCQSA CGKQCPCLQN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS RQCPCFAADR ECDPDVCRNC WVSCGDGTLG IPSQRGDNYE
701: CRNMKLLLKQ QQRVLLGRSD ISGWGAFLKN SVGKHEYLGE YTGELISHRE ADKRGKIYDR ENSSFLFNLN DQFVLDAYRK GDKLKFANHS PDPNCYAKVI
801: MVAGDHRVGI FAKERICAGE ELFYDYRYEP DRAPAWARKP EASGSKKEDG APSSGRAKKL A

Best Arabidopsis Sequence Match ( AT2G23380.1 )
(BLAST)

001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA

Arabidopsis Description

CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.