CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75032
CDX76587
CDX84179
CDX84180
CDX88663
CDX91573
CDX99960
CDY00460
CDY02805
CDY16330
CDY27567
CDY31712
CDY32715
CDY33160
CDY35632
CDY42943
CDY43476
CDY43875
CDY53612
CDY58569
CDY62688
CDY71414

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23380.1	CDX75032	AT2G35670.1	15456723
AT2G23380.1	CDX84179	AT2G35670.1	15456723
AT2G23380.1	CDX84180	AT2G35670.1	15456723
AT2G23380.1	CDY31712	AT2G35670.1	15456723
AT2G23380.1	CDY33160	AT2G35670.1	15456723
AT2G23380.1	CDY27567	AT3G20740.1	14871310
AT2G23380.1	CDY53612	AT3G20740.1	14871310
AT2G23380.1	CDY27567	AT3G20740.1	15456723
AT2G23380.1	CDY53612	AT3G20740.1	15456723
AT2G23380.1	CDY27567	AT3G20740.1	18812497
AT2G23380.1	CDY53612	AT3G20740.1	18812497
AT2G23380.1	CDX76587	AT4G16845.1	15456723
AT2G23380.1	CDY35632	AT4G16845.1	15456723
AT2G23380.1	CDY42943	AT4G16845.1	15456723
AT2G23380.1	CDY43476	AT4G16845.1	15456723
AT2G23380.1	CDY71414	AT4G16845.1	15456723
AT2G23380.1	CDX91573	AT5G51230.1	15456723
AT2G23380.1	CDX99960	AT5G51230.1	15456723
AT2G23380.1	CDY00460	AT5G51230.1	15456723
AT2G23380.1	CDY16330	AT5G51230.1	15456723
AT2G23380.1	CDX88663	AT5G58230.1	23778966
AT2G23380.1	CDY02805	AT5G58230.1	23778966
AT2G23380.1	CDY32715	AT5G58230.1	23778966
AT2G23380.1	CDY43875	AT5G58230.1	23778966
AT2G23380.1	CDY58569	AT5G58230.1	23778966
AT2G23380.1	CDY62688	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032169.1-P	Field mustard	nucleus, plastid	98.24	98.57
CDY38942	Canola	nucleus, plastid	98.13	98.46
AT2G23380.1	Thale cress	nucleus	86.26	87.03
KRH28444	Soybean	nucleus	60.66	64.11
VIT_07s0031g00320.t01	Wine grape	nucleus	61.32	63.92
KRH77020	Soybean	nucleus	59.67	63.07
GSMUA_AchrUn_...	Banana	nucleus	50.88	60.05
PGSC0003DMT400084490	Potato	nucleus	58.13	57.38
Solyc03g044380.2.1	Tomato	nucleus	57.58	56.89
TraesCS7A01G128300.1	Wheat	nucleus	53.41	54.79
TraesCS7D01G127100.2	Wheat	nucleus	53.3	54.68
TraesCS7B01G028200.2	Wheat	nucleus	53.3	54.68
Os06t0275500-01	Rice	nucleus	53.08	53.91
EER89265	Sorghum	plastid	55.16	53.8
HORVU7Hr1G026840.1	Barley	cytosol, mitochondrion, nucleus	53.63	53.1
Zm00001d036296_P004	Maize	nucleus, plastid	54.18	50.1
PGSC0003DMT400010235	Potato	nucleus	44.07	48.96
TraesCS7B01G028500.2	Wheat	nucleus	42.64	48.38
TraesCS7D01G127400.1	Wheat	nucleus	42.09	47.76
TraesCS7A01G128600.1	Wheat	nucleus	41.76	47.44
HORVU7Hr1G026910.29	Barley	cytosol, nucleus	40.77	47.14
CDY07102	Canola	nucleus	41.21	43.81
CDY22021	Canola	nucleus	40.99	43.78
CDY15252	Canola	nucleus	20.99	43.12
CDY17381	Canola	nucleus	36.92	39.95
CDX89960	Canola	nucleus	25.27	36.05
CDY37467	Canola	nucleus	25.82	35.39
CDY32472	Canola	nucleus	24.95	35.3
CDX98400	Canola	nucleus	6.92	19.63
CDX67669	Canola	cytosol, nucleus, plastid	5.38	19.07
CDX67818	Canola	nucleus	6.7	19.0
CDY41194	Canola	nucleus	6.81	17.87
CDX83438	Canola	cytosol	6.92	17.07
CDX79778	Canola	cytosol	6.81	16.99
CDX71856	Canola	nucleus	6.7	16.94
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.81	16.45
CDX95590	Canola	nucleus	6.59	16.44
CDY36467	Canola	nucleus	8.46	15.56
CDY23260	Canola	nucleus	7.91	14.57
CDX88310	Canola	nucleus	6.92	13.67
CDX87571	Canola	nucleus	6.92	13.67
CDX92851	Canola	mitochondrion	12.09	12.01
CDY29869	Canola	mitochondrion	12.53	11.91
CDX95185	Canola	endoplasmic reticulum, nucleus	6.26	11.66
CDY35655	Canola	nucleus	12.2	11.4
CDY14381	Canola	nucleus	11.98	11.19
CDX67860	Canola	nucleus	10.77	10.17
CDY25072	Canola	nucleus	10.77	10.03
CDY15398	Canola	nucleus	10.77	9.48
CDY19078	Canola	nucleus	10.55	9.32
CDY06182	Canola	nucleus	10.77	9.23
CDY10007	Canola	nucleus	10.44	8.54
CDY52297	Canola	nucleus	9.67	6.83
CDX88357	Canola	nucleus	10.33	5.67
CDX87527	Canola	nucleus	10.33	5.67
CDX95184	Canola	cytosol	4.73	3.82

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10	GO:A0A078DM07	EnsemblPlants:CDX89569
ProteinID:CDX89569	ProteinID:CDX89569.1	InterPro:CXC_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031519	EnsemblPlantsGene:GSBRNA2T00149901001
InterPro:Hist-Lys_N-MeTrfase_EZ	InterPro:IPR001214	InterPro:IPR025778	InterPro:IPR026489	PFAM:PF00856	PFscan:PS50280
PFscan:PS51576	PFscan:PS51633	PANTHER:PTHR22884	PANTHER:PTHR22884:SF237	InterPro:SET_dom	SMART:SM00317
SMART:SM01114	SUPFAM:SSF82199	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI0004EE5842	SEG:seg	:

Description

BnaC04g35880D

Coordinates

chrLK031859:+:1274356..1279067

Molecular Weight (calculated)

100932.0 Da

IEP (calculated)

9.025

GRAVY (calculated)

-0.851

Length

910 amino acids

Sequence
(BLAST)

001: MASGASPSSS ATRSDPHKHS TTSQAEKRAP ASKEVAAVID SLKKKLAADR CISIKKRIDE NKKNVRGITQ STMRSCMERG GGSYKDGSDL LVKRQRDSPG
101: MKSGLNASDA DKSNNHSSFL EDGNASSTTM VQGSSVPVKI SLRPIKMPDV KRLSPYTTWV FLDRNQRMTE DQSVVGRRRI YYDQTGGEAL ICSDSEEEAI
201: DEEDEKRAFV EPEDFIIRMT LDQLGLSDSV LEELANFLSR SSSEIKARYE VLMKEKEISE SGDNQAESSL LNKDMDGALD SFDNLFCRRC LVFDCRLHGC
301: SQDLIFPAEK PAPWTTPVDE NLTCGANCYK TLLKSNRIPA NGTTEDKTGT SSDGAGTKTT SKFSGKLNRK KTKTFPSESA SSNEKCTPET SDSENGVQQD
401: TNPEKVSSSS KVKASGRRGG RKRNNNRVAE RVSRRTQKRQ KKSEASDTDS IATGSRSASD AKHKDNEDAT SSSQKHVKSG SSKNSRKNDT PVEDSKNSVK
501: GDDPVSQLNA VASEPCSDGS LRKEEFVGEN VCPGGLSEDK SWRPLEKSLF QKGVEIFGMN SCMIARNLLC GLKSCWEVFQ YMTCSENKAS LFGGDALNPD
601: GSSKFDINGN MTNNQVRRRS RFLRRRGKVR RLKYTWKSAA YHSIRKKSTD KKDQPCRQFN PCNCKTACGK ECTCLLNGTC CEKYCGCPKS CKNRFRGCHC
701: AKSQCRSRQC PCFAADRECD PDVCRNCWVI GGDGTLGVPS QRGDNYECRN MKLLLKQQQR VLLGISDVSG WGAFLKNSVS KHEYLGEYTG ELISHKEADK
801: RGKIYDRENS SFLFNLNDQA RLSLSRLKGD KLKFANHSPE PNCYAKVIMV AGDHRVGIFA KERILAGEEL FYDYRYEPDR APAWARKPEA SGSKKDENVT
901: PSVGRPKKVA

Best Arabidopsis Sequence Match ( AT2G23380.1 )
(BLAST)

001: MASEASPSSS ATRSEPPKDS PAEERGPASK EVSEVIESLK KKLAADRCIS IKKRIDENKK NLFAITQSFM RSSMERGGSC KDGSDLLVKR QRDSPGMKSG
101: IDESNNNRYV EDGPASSGMV QGSSVPVKIS LRPIKMPDIK RLSPYTTWVF LDRNQRMTED QSVVGRRRIY YDQTGGEALI CSDSEEEAID DEEEKRDFLE
201: PEDYIIRMTL EQLGLSDSVL AELASFLSRS TSEIKARHGV LMKEKEVSES GDNQAESSLL NKDMEGALDS FDNLFCRRCL VFDCRLHGCS QDLIFPAEKP
301: APWCPPVDEN LTCGANCYKT LLKSGRFPGY GTIEGKTGTS SDGAGTKTTP TKFSSKLNGR KPKTFPSESA SSNEKCALET SDSENGLQQD TNSDKVSSSP
401: KVKGSGRRVG RKRNKNRVAE RVPRKTQKRQ KKTEASDSDS IASGSCSPSD AKHKDNEDAT SSSQKHVKSG NSGKSRKNGT PAEVSNNSVK DDVPVCQSNE
501: VASELDAPGS DESLRKEEFM GETVSRGRLA TNKLWRPLEK SLFDKGVEIF GMNSCLIARN LLSGFKSCWE VFQYMTCSEN KASFFGGDGL NPDGSSKFDI
601: NGNMVNNQVR RRSRFLRRRG KVRRLKYTWK SAAYHSIRKR ITEKKDQPCR QFNPCNCKIA CGKECPCLLN GTCCEKYCGC PKSCKNRFRG CHCAKSQCRS
701: RQCPCFAADR ECDPDVCRNC WVIGGDGSLG VPSQRGDNYE CRNMKLLLKQ QQRVLLGISD VSGWGAFLKN SVSKHEYLGE YTGELISHKE ADKRGKIYDR
801: ENCSFLFNLN DQFVLDAYRK GDKLKFANHS PEPNCYAKVI MVAGDHRVGI FAKERILAGE ELFYDYRYEP DRAPAWAKKP EAPGSKKDEN VTPSVGRPKK
901: LA

Arabidopsis Description

CLFHistone-lysine N-methyltransferase CLF [Source:UniProtKB/Swiss-Prot;Acc:P93831]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.