CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83438	Canola	cytosol	92.05	91.06
CDX79778	Canola	cytosol	72.6	72.6
AT2G44150.1	Thale cress	nucleus	72.05	72.45
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	73.97	71.62
PGSC0003DMT400010951	Potato	cytosol	36.16	57.39
CDY41194	Canola	nucleus	54.52	57.35
CDX71856	Canola	nucleus	54.52	55.28
CDX98400	Canola	nucleus	47.95	54.52
CDX67818	Canola	nucleus	46.85	53.27
GSMUA_Achr2P12180_001	Banana	nucleus	51.78	50.67
KRH75137	Soybean	cytosol	17.53	50.39
Os09t0307800-01	Rice	cytosol	46.03	49.41
Solyc12g100290.1.1	Tomato	nucleus	57.26	48.16
VIT_16s0039g00740.t01	Wine grape	mitochondrion	58.08	46.7
TraesCS7A01G453700.1	Wheat	nucleus	43.01	46.45
TraesCS7D01G443000.1	Wheat	nucleus	42.74	46.15
TraesCS7B01G354300.1	Wheat	nucleus	42.74	45.88
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	55.89	45.23
TraesCS5D01G184500.1	Wheat	nucleus	43.56	44.79
Zm00001d005563_P006	Maize	nucleus	41.1	44.25
TraesCS5A01G179900.1	Wheat	nucleus	43.56	43.92
TraesCS5B01G177800.2	Wheat	nucleus	43.56	43.92
Zm00001d020038_P001	Maize	nucleus	41.1	42.13
HORVU5Hr1G054880.2	Barley	mitochondrion	42.47	40.47
OQU89246	Sorghum	nucleus	40.82	39.95
HORVU7Hr1G103420.7	Barley	nucleus	43.01	38.01
CDX67669	Canola	cytosol, nucleus, plastid	17.53	24.9
CDY23260	Canola	nucleus	31.23	23.08
CDY36467	Canola	nucleus	30.96	22.83
CDX87571	Canola	nucleus	24.38	19.31
CDX88310	Canola	nucleus	24.11	19.09
CDX95185	Canola	endoplasmic reticulum, nucleus	17.26	12.88
CDY15252	Canola	nucleus	13.7	11.29
CDY32472	Canola	nucleus	13.97	7.93
CDY37467	Canola	nucleus	13.97	7.68
CDX89960	Canola	nucleus	13.42	7.68
CDY22021	Canola	nucleus	16.71	7.16
CDY07102	Canola	nucleus	16.71	7.13
CDX92851	Canola	mitochondrion	17.81	7.1
CDY29869	Canola	mitochondrion	17.81	6.79
CDY38942	Canola	nucleus, plastid	16.71	6.73
CDX89569	Canola	nucleus, plastid	16.44	6.59
CDX67860	Canola	nucleus	16.99	6.43
CDY25072	Canola	nucleus	16.99	6.35
CDY14381	Canola	nucleus	16.44	6.16
CDY35655	Canola	nucleus	16.44	6.16
CDY19078	Canola	nucleus	16.71	5.92
CDY15398	Canola	nucleus	16.71	5.9
CDX87527	Canola	nucleus	26.3	5.79
CDX88357	Canola	nucleus	26.03	5.73
CDY17381	Canola	nucleus	13.15	5.71
CDY06182	Canola	nucleus	15.89	5.46
CDY10007	Canola	nucleus	15.62	5.12
CDY52297	Canola	nucleus	17.81	5.05
CDX95184	Canola	cytosol	4.93	1.6

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	GO:A0A078E1K3	InterPro:AWS_dom	EnsemblPlants:CDX95590
ProteinID:CDX95590	ProteinID:CDX95590.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00101452001	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787
PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884
InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199
UniParc:UPI0004EE01E1	:	:	:	:	:

Description

BnaC03g24710D

Coordinates

chrLK031890:+:119676..122305

Molecular Weight (calculated)

41243.8 Da

IEP (calculated)

5.677

GRAVY (calculated)

-0.549

Length

365 amino acids

Sequence
(BLAST)

001: MPASKKVRSN PIGQVFNKLL ENIGESEEFS LPDWLNEGKP TPYTYIKRNS YEDIYVSEKT KKKAEDDGIF CSCALSHGSS SVVCGSECDC GLLNASCSSD
101: CYCGSECNNK PFQQRRVKKL KIIQTEKCGS GIVADEYIQK GEFITEYVGE VIDDATCAQR LWEMKGRGET NFYLCEINRN MVIDATKKGN KSRYINHSCN
201: PNTQMQTWII EGETRIGIFA ISDINKGEHI TYDYQFVPFG EDQDCHCGAI GCRKKLGVKP NKPKLVPDEE TRNIVVSELA QQTLPQVHHN GDIHEGTLIN
301: NLSEEQSCPR TCIGVVIRLS RPTSDRCFGI IRRFHEVTRK HSVMFEDGVT EFIDLSKEDW EILSD

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.