Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G179900.1 | Wheat | nucleus | 94.97 | 88.67 |
| TraesCS5D01G184500.1 | Wheat | nucleus | 92.6 | 88.17 |
| HORVU5Hr1G054880.2 | Barley | mitochondrion | 87.57 | 77.28 |
| HORVU7Hr1G103420.7 | Barley | nucleus | 94.08 | 77.0 |
| Os09t0307800-01 | Rice | cytosol | 74.85 | 74.41 |
| Zm00001d005563_P006 | Maize | nucleus | 63.61 | 63.42 |
| Zm00001d020038_P001 | Maize | nucleus | 63.02 | 59.83 |
| GSMUA_Achr1P23230_001 | Banana | cytosol | 52.66 | 59.33 |
| OQU89246 | Sorghum | nucleus | 63.91 | 57.91 |
| AT2G44150.1 | Thale cress | nucleus | 53.55 | 49.86 |
| KRH38763 | Soybean | cytosol | 50.89 | 49.28 |
| KRH09264 | Soybean | nucleus | 50.89 | 49.28 |
| CDX79778 | Canola | cytosol | 51.78 | 47.95 |
| Bra004809.1-P | Field mustard | nucleus | 51.78 | 47.3 |
| CDY17880 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 52.66 | 47.21 |
| AT3G59960.1 | Thale cress | nucleus | 44.97 | 46.2 |
| Bra007496.1-P | Field mustard | nucleus | 46.45 | 45.64 |
| CDY41194 | Canola | nucleus | 46.45 | 45.24 |
| KRH75137 | Soybean | cytosol | 16.57 | 44.09 |
| Bra000343.1-P | Field mustard | cytosol | 47.04 | 43.92 |
| CDX71856 | Canola | nucleus | 46.45 | 43.61 |
| PGSC0003DMT400010951 | Potato | cytosol | 29.59 | 43.48 |
| CDX83438 | Canola | cytosol | 47.04 | 43.09 |
| CDX95590 | Canola | nucleus | 46.45 | 43.01 |
| CDX98400 | Canola | nucleus | 40.53 | 42.68 |
| CDX67818 | Canola | nucleus | 39.94 | 42.06 |
| Bra003396.1-P | Field mustard | cytosol | 31.36 | 40.93 |
| Solyc12g100290.1.1 | Tomato | nucleus | 50.89 | 39.63 |
| VIT_16s0039g00740.t01 | Wine grape | mitochondrion | 52.07 | 38.77 |
| Solyc01g006220.2.1 | Tomato | endoplasmic reticulum | 49.41 | 37.03 |
| TraesCS2A01G302100.1 | Wheat | nucleus | 27.51 | 18.53 |
| TraesCS6A01G219600.1 | Wheat | nucleus | 36.09 | 15.91 |
| TraesCS7A01G128600.1 | Wheat | nucleus | 15.98 | 6.74 |
| TraesCS7A01G128300.1 | Wheat | nucleus | 17.46 | 6.65 |
| TraesCS3A01G143300.2 | Wheat | plastid | 18.64 | 6.33 |
| TraesCS5A01G357700.1 | Wheat | mitochondrion | 1.48 | 6.25 |
| TraesCS3A01G237200.2 | Wheat | nucleus | 18.93 | 6.23 |
| TraesCS4A01G121300.4 | Wheat | mitochondrion | 17.46 | 6.1 |
| TraesCS5A01G165200.1 | Wheat | plastid | 18.34 | 5.71 |
| TraesCS2A01G005000.1 | Wheat | nucleus | 29.59 | 5.52 |
| TraesCS5A01G042700.1 | Wheat | nucleus, plastid | 18.05 | 4.71 |
| TraesCS5A01G357600.1 | Wheat | plastid | 19.82 | 3.47 |
Protein Annotations
| KEGG:00310+2.1.1.43 | MapMan:12.3.3.4 | Gene3D:2.170.270.10 | InterPro:AWS_dom | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016740 |
| GO:GO:0018024 | GO:GO:0019538 | InterPro:Hist-Lys_N-MeTrfase_SET2_plant | InterPro:IPR001214 | InterPro:IPR003616 | InterPro:IPR006560 |
| InterPro:IPR025787 | PFAM:PF00856 | PFscan:PS50280 | PFscan:PS50868 | PFscan:PS51215 | PFscan:PS51578 |
| PANTHER:PTHR22884 | InterPro:Post-SET_dom | InterPro:SET_dom | SMART:SM00317 | SMART:SM00508 | SMART:SM00570 |
| SUPFAM:SSF82199 | EnsemblPlantsGene:TraesCS7A01G453700 | EnsemblPlants:TraesCS7A01G453700.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7A:+:648136915..648146262
Molecular Weight (calculated)
39082.1 Da
IEP (calculated)
5.026
GRAVY (calculated)
-0.659
Length
338 amino acids
Sequence
(BLAST)
(BLAST)
001: MGPEHVFYEL TKALKDPADF VDFDLPSALK EWKLGYYIPI KRNIYLTKKR VEDDGIFCSC SLSSESSVTC GKDCQCGMLF SCCSSNCKCE NKCANKSFQL
101: RSLFKTGLIK TEKCGFGLIA EDEIKKGEFV IEYVGEVIDD RTCEERLWKM KRQRYTNFYL CEISSNMVID ATNKGNKSRF INHSCEPNTE MQKWTVDGQT
201: RVGIFALRDI ERGEELTYDY KFVQFGADQD CHCGSSNCRK MVGTSKSFNS FVLHNGNSGS SQDQHDIKKR KTTSDNCIGE IIRLWDRRDK MYVPAVVHDY
301: DEYTGMHTLL LDEETTEKFD MREEDWDFLP RPEDPEED
101: RSLFKTGLIK TEKCGFGLIA EDEIKKGEFV IEYVGEVIDD RTCEERLWKM KRQRYTNFYL CEISSNMVID ATNKGNKSRF INHSCEPNTE MQKWTVDGQT
201: RVGIFALRDI ERGEELTYDY KFVQFGADQD CHCGSSNCRK MVGTSKSFNS FVLHNGNSGS SQDQHDIKKR KTTSDNCIGE IIRLWDRRDK MYVPAVVHDY
301: DEYTGMHTLL LDEETTEKFD MREEDWDFLP RPEDPEED
001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV
Arabidopsis Description
ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.