Factsheet for Solyc12g100290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G44150.1	Thale cress	nucleus	53.69	64.19
Bra004809.1-P	Field mustard	nucleus	53.23	62.43
CDX79778	Canola	cytosol	52.07	61.92
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	63.59	61.2
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.0	61.01
GSMUA_Achr2P12180_001	Banana	nucleus	51.84	60.32
AT3G59960.1	Thale cress	nucleus	44.93	59.27
VIT_16s0039g00740.t01	Wine grape	mitochondrion	61.52	58.81
Bra000343.1-P	Field mustard	cytosol	48.16	57.73
CDX95590	Canola	nucleus	48.16	57.26
CDX83438	Canola	cytosol	48.39	56.91
CDY41194	Canola	nucleus	44.7	55.91
Bra007496.1-P	Field mustard	nucleus	44.01	55.52
CDX71856	Canola	nucleus	44.47	53.61
CDX98400	Canola	nucleus	39.4	53.27
KRH75137	Soybean	cytosol	15.44	52.76
CDX67818	Canola	nucleus	38.48	52.02
TraesCS7A01G453700.1	Wheat	nucleus	39.63	50.89
TraesCS7D01G443000.1	Wheat	nucleus	39.4	50.59
TraesCS7B01G354300.1	Wheat	nucleus	39.63	50.59
Bra003396.1-P	Field mustard	cytosol	29.95	50.19
Os09t0307800-01	Rice	cytosol	39.17	50.0
TraesCS5D01G184500.1	Wheat	nucleus	39.86	48.73
Solyc07g006060.2.1	Tomato	nucleus	27.19	47.97
TraesCS5B01G177800.2	Wheat	nucleus	39.86	47.79
TraesCS5A01G179900.1	Wheat	nucleus	39.17	46.96
Zm00001d005563_P006	Maize	nucleus	35.94	46.02
HORVU5Hr1G054880.2	Barley	mitochondrion	39.63	44.91
Zm00001d020038_P001	Maize	nucleus	35.48	43.26
HORVU7Hr1G103420.7	Barley	nucleus	39.63	41.65
OQU89246	Sorghum	nucleus	35.48	41.29
Solyc07g008580.1.1	Tomato	nucleus	20.28	31.65
Solyc09g060000.1.1	Tomato	nucleus	16.13	26.62
Solyc07g008500.1.1	Tomato	nucleus	15.44	23.26
Solyc07g008460.2.1	Tomato	nucleus	23.27	22.35
Solyc02g093200.2.1	Tomato	endoplasmic reticulum, vacuole	11.98	11.23
Solyc09g098260.1.1	Tomato	nucleus	14.52	10.71
Solyc03g112690.1.1	Tomato	nucleus	14.52	9.78
Solyc04g057880.2.1	Tomato	nucleus	24.88	7.74
Solyc01g079390.2.1	Tomato	nucleus	13.59	7.12
Solyc03g044380.2.1	Tomato	nucleus	14.29	6.73
Solyc06g059960.2.1	Tomato	nucleus	24.65	6.43
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	13.36	5.91
Solyc01g095890.2.1	Tomato	nucleus	13.59	5.63
Solyc01g006880.2.1	Tomato	nucleus	14.98	4.07
Solyc09g098250.2.1	Tomato	nucleus	0.92	0.54
Solyc02g093190.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_SET2_plant
InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787	UniProt:K4DI50	PFAM:PF00856
PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	InterPro:Post-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199	EnsemblPlantsGene:Solyc12g100290.1	EnsemblPlants:Solyc12g100290.1.1
UniParc:UPI000276946F	SEG:seg	:	:	:	:

Description

Histone-lysine N-methyltransferase ASHH3 [Source:Projected from Arabidopsis thaliana (AT2G44150) UniProtKB/Swiss-Prot;Acc:Q945S8]

Coordinates

chr12:+:67054408..67066095

Molecular Weight (calculated)

49032.0 Da

IEP (calculated)

9.612

GRAVY (calculated)

-0.255

Length

434 amino acids

Sequence
(BLAST)

001: MPAMKTAIHG GIGHVFSKLI KEIGDPVDFE LPDWLNKWQS MPYTFIKRNI YLTKKVKRRL EDDGIFCSCS STAETSVVCG KDCLCGIMLS SCSSGCKCGS
101: SCLNKPFHQR PVKKMKLVKT EKCGSGIVAD EDIKRGDFVI EYVGEVIDDK TCEERLWKMK HSGETNFYLC EINRDMVIDA TYKGNKSRYI NHSCCPNTEM
201: QKWMIDGETR IGIFATRDIK RGEHLTYDYQ FVQFGADQDC HCGAVRCRRK LGVKPNKPKL PASDTALKIV ACQVAATSPK LKALLSTRHV YQTGVPRIGS
301: SVYDSDIKIR RPRSCIGQVI RIIRSSKTRS FGIVKRFDAI TKKHFVRKSC LKMAVFSTLT CQKKIGNSVT FLSNRVLAVR TRRCSRGCHC VQIRNIECPC
401: CTKCISFILQ LFSNNAAISD DISIKQKIET FFTM

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.