Factsheet for Zm00001d020038_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005563_P006	Maize	nucleus	85.67	89.97
OQU89246	Sorghum	nucleus	87.64	83.65
TraesCS7D01G443000.1	Wheat	nucleus	60.39	63.61
TraesCS7B01G354300.1	Wheat	nucleus	60.67	63.53
Os09t0307800-01	Rice	cytosol	60.67	63.53
TraesCS7A01G453700.1	Wheat	nucleus	59.83	63.02
TraesCS5D01G184500.1	Wheat	nucleus	62.08	62.25
TraesCS5B01G177800.2	Wheat	nucleus	62.08	61.05
TraesCS5A01G179900.1	Wheat	nucleus	62.08	61.05
HORVU5Hr1G054880.2	Barley	mitochondrion	60.67	56.4
GSMUA_Achr1P23230_001	Banana	cytosol	46.63	55.33
HORVU7Hr1G103420.7	Barley	nucleus	60.67	52.3
KRH09264	Soybean	nucleus	44.66	45.56
KRH38763	Soybean	cytosol	44.38	45.27
Bra004809.1-P	Field mustard	nucleus	46.91	45.14
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	47.75	45.09
CDX79778	Canola	cytosol	46.07	44.93
AT2G44150.1	Thale cress	nucleus	45.51	44.63
Bra007496.1-P	Field mustard	nucleus	42.7	44.19
CDY41194	Canola	nucleus	42.7	43.8
Bra000343.1-P	Field mustard	cytosol	43.26	42.54
AT3G59960.1	Thale cress	nucleus	39.04	42.25
CDX71856	Canola	nucleus	42.7	42.22
CDX83438	Canola	cytosol	43.54	42.01
CDX95590	Canola	nucleus	42.13	41.1
PGSC0003DMT400010951	Potato	cytosol	26.4	40.87
CDX98400	Canola	nucleus	36.24	40.19
KRH75137	Soybean	cytosol	14.33	40.16
CDX67818	Canola	nucleus	35.67	39.56
Bra003396.1-P	Field mustard	cytosol	28.37	39.0
Solyc12g100290.1.1	Tomato	nucleus	43.26	35.48
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	44.66	35.26
VIT_16s0039g00740.t01	Wine grape	mitochondrion	44.1	34.58
Zm00001d051057_P002	Maize	nucleus	28.37	21.4
Zm00001d032143_P001	Maize	mitochondrion, nucleus, plastid	26.69	19.04
Zm00001d044020_P001	Maize	cytosol	12.92	17.97
Zm00001d003679_P006	Maize	nucleus	24.72	17.15
Zm00001d008941_P002	Maize	plastid	18.54	6.7
Zm00001d023333_P025	Maize	nucleus	19.1	5.99
Zm00001d011490_P003	Maize	nucleus	17.42	5.97
Zm00001d016804_P002	Maize	nucleus	29.49	5.85
Zm00001d036296_P004	Maize	nucleus, plastid	16.01	5.79
Zm00001d019907_P003	Maize	nucleus	16.29	5.52
Zm00001d047636_P002	Maize	nucleus	11.8	4.73
Zm00001d028890_P002	Maize	nucleus	10.96	3.51
Zm00001d006323_P069	Maize	nucleus	17.42	3.16
Zm00001d039355_P010	Maize	plastid	12.36	3.08

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	UniProt:A0A1D6I1R1	InterPro:AWS_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787	ProteinID:ONM54145.1
PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884
InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199
UniParc:UPI000844A539	EnsemblPlantsGene:Zm00001d020038	EnsemblPlants:Zm00001d020038_P001	EnsemblPlants:Zm00001d020038_T001	SEG:seg	:

Description

set domain gene110aHistone-lysine N-methyltransferase%2C H3 lysine-36 and H4 lysine-20specific%3B SET domain protein 110

Coordinates

chr7:-:87795585..87811699

Molecular Weight (calculated)

41361.6 Da

IEP (calculated)

8.089

GRAVY (calculated)

-0.566

Length

356 amino acids

Sequence
(BLAST)

001: MVRMSSSSSA SGVNLTEQIE NVFDQLISKI EQADPDFDPR PFLKQLNVLG RYEPIKRNVY FTKRYIEDYG ISCHCKPSPG SSVVCGRDCY CSMLFSCCSS
101: QCECDIACTN KSFQHRPLTK TKLIKTEKCG HGLVAEDEIK KGEFVIEYVG EVIDDRTCEN RLWTMKRLDD TDFYLCEVSS NMVIDATNKG NLSRFINHSC
201: EPNTAMQKWT VDGETRVGIF ALRDIKIGEE LTYDYKFVQF GAAQVCHCGS SKCRKMLGTT KYSGSSQNHR TKKKKRKTSC ENCIQQFLRL WHPRQKMYVG
301: CWIVDFDQGT KMHTLQFIDH HTEKFDLKEE EWHFLEVLRC QRKMNKWMML NEQGRL

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.