CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000343.1-P	Field mustard	cytosol	97.56	99.45
CDX95590	Canola	nucleus	91.06	92.05
CDX79778	Canola	cytosol	73.71	74.52
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	74.25	72.68
AT2G44150.1	Thale cress	nucleus	71.0	72.18
PGSC0003DMT400010951	Potato	cytosol	36.04	57.83
CDY41194	Canola	nucleus	53.66	57.06
CDX71856	Canola	nucleus	53.39	54.72
CDX98400	Canola	nucleus	46.34	53.27
CDX67818	Canola	nucleus	44.99	51.71
GSMUA_Achr2P12180_001	Banana	nucleus	51.49	50.94
Os09t0307800-01	Rice	cytosol	45.8	49.71
KRH75137	Soybean	cytosol	16.8	48.82
Solyc12g100290.1.1	Tomato	nucleus	56.91	48.39
VIT_16s0039g00740.t01	Wine grape	mitochondrion	58.27	47.36
TraesCS7A01G453700.1	Wheat	nucleus	43.09	47.04
TraesCS7D01G443000.1	Wheat	nucleus	42.82	46.75
TraesCS7B01G354300.1	Wheat	nucleus	42.82	46.47
TraesCS5D01G184500.1	Wheat	nucleus	44.17	45.92
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	55.83	45.68
Zm00001d005563_P006	Maize	nucleus	41.73	45.43
TraesCS5A01G179900.1	Wheat	nucleus	44.17	45.03
TraesCS5B01G177800.2	Wheat	nucleus	44.17	45.03
Zm00001d020038_P001	Maize	nucleus	42.01	43.54
HORVU5Hr1G054880.2	Barley	mitochondrion	43.09	41.51
OQU89246	Sorghum	nucleus	41.73	41.29
HORVU7Hr1G103420.7	Barley	nucleus	43.09	38.5
CDX67669	Canola	cytosol, nucleus, plastid	17.34	24.9
CDY23260	Canola	nucleus	30.89	23.08
CDY36467	Canola	nucleus	30.89	23.03
CDX87571	Canola	nucleus	24.66	19.74
CDX88310	Canola	nucleus	24.39	19.52
CDX95185	Canola	endoplasmic reticulum, nucleus	16.26	12.27
CDY15252	Canola	nucleus	13.82	11.51
CDY32472	Canola	nucleus	14.09	8.09
CDX89960	Canola	nucleus	13.55	7.84
CDY37467	Canola	nucleus	13.82	7.68
CDY22021	Canola	nucleus	17.07	7.39
CDY07102	Canola	nucleus	17.07	7.36
CDX92851	Canola	mitochondrion	18.16	7.31
CDY29869	Canola	mitochondrion	18.43	7.11
CDY38942	Canola	nucleus, plastid	17.34	7.06
CDX89569	Canola	nucleus, plastid	17.07	6.92
CDX67860	Canola	nucleus	17.89	6.85
CDY25072	Canola	nucleus	17.89	6.76
CDY14381	Canola	nucleus	16.8	6.37
CDY35655	Canola	nucleus	16.8	6.37
CDY19078	Canola	nucleus	17.07	6.12
CDX87527	Canola	nucleus	27.37	6.1
CDY15398	Canola	nucleus	17.07	6.09
CDX88357	Canola	nucleus	27.1	6.04
CDY17381	Canola	nucleus	13.55	5.95
CDY06182	Canola	nucleus	15.45	5.37
CDY10007	Canola	nucleus	15.18	5.03
CDY52297	Canola	nucleus	16.8	4.81
CDX95184	Canola	cytosol	4.34	1.42

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	GO:A0A078D847	InterPro:AWS_dom	EnsemblPlants:CDX83438
ProteinID:CDX83438	ProteinID:CDX83438.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00139015001	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787
PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884
InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199
UniParc:UPI0004EE7A01	SEG:seg	:	:	:	:

Description

BnaA03g20680D

Coordinates

chrLK031832:-:1562221..1564847

Molecular Weight (calculated)

41718.4 Da

IEP (calculated)

5.221

GRAVY (calculated)

-0.507

Length

369 amino acids

Sequence
(BLAST)

001: MPASKKVHVF FSQVSERNPI EQVFNKLLED IGEEEEFSLP DWLNEGKPTP YTYIKRNVHL TEKTKKKAED DGIFCTCALS HGSSSVVCGS DCDCGLLNAS
101: CSSDCKCGSE CNNKPFQQRR VKKLKLIQTD KCGSGIVADE YIQEGEFITE YVGEVIDDVT CAQRLWEMKG LGEKNFYLCE INKNMVIDAT NKGNKSRYIN
201: HSCNPNTQMQ TWIIEGETRI GIFAISDINK GEHITYDYQF VAFGEDQDCH CGAIGCRKKL GVKPNKPKLV SDEETRKIVV SELAQQTLPQ VHHNGDIHEG
301: TLINNLSEEQ TCPRTCIGVV IRLSRPTSDR CFGIIRRFDE VTRKHSVMFE DGVTEFIDLS KEDWEILSD

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.