CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY08148

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30860.1	CDY08148	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010270.1-P	Field mustard	nucleus	97.77	97.77
CDY36467	Canola	nucleus	95.55	95.35
AT4G30860.1	Thale cress	nucleus	84.01	83.5
Solyc07g006060.2.1	Tomato	nucleus	32.59	65.45
VIT_11s0037g00880.t01	Wine grape	nucleus	58.91	58.91
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	22.06	57.98
KRH54981	Soybean	plastid	54.86	51.52
HORVU3Hr1G083480.1	Barley	nucleus, peroxisome	24.49	51.05
GSMUA_Achr7P16220_001	Banana	nucleus	51.42	50.8
OQU80550	Sorghum	nucleus	30.57	46.6
Zm00001d051057_P002	Maize	nucleus	44.13	46.19
GSMUA_Achr6P30890_001	Banana	mitochondrion	49.8	45.81
KXG30618	Sorghum	nucleus	48.38	40.72
TraesCS3D01G369900.1	Wheat	plastid	33.0	36.14
Zm00001d032143_P001	Maize	mitochondrion, nucleus, plastid	34.41	34.07
TraesCS6B01G249100.1	Wheat	nucleus	50.2	33.24
CDX98400	Canola	nucleus	21.46	33.02
CDX67818	Canola	nucleus	21.46	33.02
TraesCS6D01G202600.1	Wheat	nucleus	50.4	32.63
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	24.9	32.63
TraesCS6A01G219600.1	Wheat	nucleus	50.4	32.46
CDX79778	Canola	cytosol	23.48	31.78
CDX95590	Canola	nucleus	23.08	31.23
CDY41194	Canola	nucleus	21.86	31.12
CDX83438	Canola	cytosol	23.08	30.89
CDX71856	Canola	nucleus	22.06	30.28
CDX67669	Canola	cytosol, nucleus, plastid	12.35	23.74
CDX87571	Canola	nucleus	17.0	18.22
CDX88310	Canola	nucleus	17.0	18.22
CDY15252	Canola	nucleus	12.15	13.54
CDX95185	Canola	endoplasmic reticulum, nucleus	12.15	12.27
CDX89960	Canola	nucleus	13.97	10.81
CDY32472	Canola	nucleus	13.36	10.26
CDY37467	Canola	nucleus	13.56	10.09
CDY22021	Canola	nucleus	14.98	8.69
CDY07102	Canola	nucleus	14.98	8.64
CDY29869	Canola	mitochondrion	15.99	8.25
CDX67860	Canola	nucleus	15.99	8.2
CDY25072	Canola	nucleus	16.19	8.19
CDY38942	Canola	nucleus, plastid	14.78	8.05
CDX92851	Canola	mitochondrion	14.78	7.97
CDX89569	Canola	nucleus, plastid	14.57	7.91
CDY35655	Canola	nucleus	15.59	7.91
CDY14381	Canola	nucleus	15.59	7.91
CDY17381	Canola	nucleus	11.94	7.02
CDY19078	Canola	nucleus	13.97	6.7
CDX88357	Canola	nucleus	22.47	6.7
CDY52297	Canola	nucleus	17.41	6.68
CDY15398	Canola	nucleus	13.97	6.67
CDX87527	Canola	nucleus	22.27	6.64
CDY06182	Canola	nucleus	13.77	6.4
CDY10007	Canola	nucleus	13.56	6.02
CDX95184	Canola	cytosol	7.09	3.11

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	Gene3D:3.30.40.10	GO:A0A078GA02	UniProt:A0A078GA02
InterPro:AWS_dom	EnsemblPlants:CDY23260	ProteinID:CDY23260	ProteinID:CDY23260.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	EnsemblPlantsGene:GSBRNA2T00021823001
InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR013083	InterPro:IPR025787
PFAM:PF00856	ScanProsite:PS01359	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578
PANTHER:PTHR22884	PANTHER:PTHR22884:SF455	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508
SUPFAM:SSF82199	UniParc:UPI0004EE7E69	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaA08g12860DBnaA08g12860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GA02]

Coordinates

chrLK032142:+:112399..115203

Molecular Weight (calculated)

56071.3 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.487

Length

494 amino acids

Sequence
(BLAST)

001: MLDLDNMSMS ASVSLTCCPA FLPAATGPEL AKPIDPSENI AEDCNPEHKP MIPPAEEVRD INNAITVSNG RQDPSEKSKK GLVLEDHVKN WVKRRVESGV
101: SESRCVLPFL VGAKRMAECL VCHKLVYPGE EVLCSVRGCQ GVYHLFCAKE SLGFHNLGKF RCPQHECFVC KQRTQWRCVK CPMAAHDKHA PWPKEILHLK
201: DQPGRAVCWR HSTDWRLDTK SGDAQSEIEE VFCQLPLPYV EEEFRIDLTW KDSVAKDDLP PYVHIRHIYF VKKKRDNAND GVGCTNCGPT CCRSCVCRVQ
301: CVSCSKRCGC PETCGNRPFR KDKKIKIVKT KLCGWGVEAA ESINKEDFIV EYIGEVISDA QCEQRLWDMK HKGLKDFYMC EIQKDFTIDA TFKGNASRFL
401: NHSCNPNCVL EKWQVEGETR VGVFAARQIE AGEPLTYDYR FVQFGPEVKC NCGSENCQGY LGTKRKEPNC LVVSWGAKRR RVSHRPLVHK LQQD

Best Arabidopsis Sequence Match ( AT4G30860.1 )
(BLAST)

001: MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD

Arabidopsis Description

ASHR3SDG4 [Source:UniProtKB/TrEMBL;Acc:A0A178UX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.