Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 4
- extracellular 4
- vacuole 3
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g006060.2.1 | Tomato | nucleus | 71.28 | 54.47 |
| PGSC0003DMT400010951 | Potato | cytosol | 37.23 | 30.43 |
| HORVU3Hr1G083480.1 | Barley | nucleus, peroxisome | 33.51 | 26.58 |
| VIT_11s0037g00880.t01 | Wine grape | nucleus | 62.23 | 23.68 |
| OQU80550 | Sorghum | nucleus | 39.36 | 22.84 |
| KRH54981 | Soybean | plastid | 63.83 | 22.81 |
| CDY23260 | Canola | nucleus | 57.98 | 22.06 |
| PGSC0003DMT400028514 | Potato | nucleus | 26.06 | 21.88 |
| Bra010270.1-P | Field mustard | nucleus | 57.45 | 21.86 |
| CDY36467 | Canola | nucleus | 57.45 | 21.82 |
| GSMUA_Achr7P16220_001 | Banana | nucleus | 57.98 | 21.8 |
| AT4G30860.1 | Thale cress | nucleus | 56.91 | 21.53 |
| GSMUA_Achr6P30890_001 | Banana | mitochondrion | 56.91 | 19.93 |
| PGSC0003DMT400086207 | Potato | nucleus | 25.0 | 18.88 |
| KXG30618 | Sorghum | nucleus | 55.85 | 17.89 |
| PGSC0003DMT400059166 | Potato | nucleus | 27.66 | 17.11 |
| Zm00001d051057_P002 | Maize | nucleus | 41.49 | 16.53 |
| TraesCS3D01G369900.1 | Wheat | plastid | 38.83 | 16.19 |
| Zm00001d032143_P001 | Maize | mitochondrion, nucleus, plastid | 42.02 | 15.83 |
| TraesCS6B01G249100.1 | Wheat | nucleus | 57.98 | 14.61 |
| PGSC0003DMT400059198 | Potato | nucleus | 27.66 | 14.53 |
| TraesCS6D01G202600.1 | Wheat | nucleus | 57.98 | 14.29 |
| TraesCS6A01G219600.1 | Wheat | nucleus | 57.98 | 14.21 |
| PGSC0003DMT400028500 | Potato | nucleus | 28.19 | 13.22 |
| PGSC0003DMT400046777 | Potato | nucleus | 21.28 | 6.22 |
| PGSC0003DMT400023342 | Potato | nucleus | 18.62 | 4.22 |
| PGSC0003DMT400084490 | Potato | nucleus | 19.68 | 4.01 |
| PGSC0003DMT400010235 | Potato | nucleus | 13.83 | 3.17 |
| PGSC0003DMT400023546 | Potato | nucleus | 4.26 | 1.14 |
Protein Annotations
| KEGG:00310+2.1.1.43 | MapMan:12.3.3.4 | Gene3D:2.170.270.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0008168 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0032259 |
| InterPro:Hist-Lys_N-MeTrfase_SET2_plant | InterPro:IPR001214 | InterPro:IPR003616 | InterPro:IPR025787 | UniProt:M1AS09 | PFAM:PF00856 |
| EnsemblPlantsGene:PGSC0003DMG402011157 | PGSC:PGSC0003DMG402011157 | EnsemblPlants:PGSC0003DMT400028986 | PFscan:PS50280 | PFscan:PS50868 | PFscan:PS51578 |
| PANTHER:PTHR22884 | PANTHER:PTHR22884:SF455 | InterPro:Post-SET_dom | InterPro:SET_dom | SMART:SM00317 | SMART:SM00508 |
| SUPFAM:SSF82199 | TMHMM:TMhelix | UniParc:UPI000294EA98 | : | : | : |
Description
Set domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG402011157]
Coordinates
chr7:+:1414132..1418456
Molecular Weight (calculated)
21797.6 Da
IEP (calculated)
9.134
GRAVY (calculated)
-0.078
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFESKWPLV AHLLCNLYVY YQMSMSRHFV FVLAGILRLL IWLSFRVSVI DDALCEKRLW DMKYKGVQNF YMCELRKDFT IDATFKGNLS RFLNHSCDPN
101: CKLEKWQVEG ETRIGVFAAR FIEVGEPLTY DYRFVLFGSE VKCHCGASNC QGYLGSKKKI TSKLDISWGS KRKRTSTSCL TIIKSNSC
101: CKLEKWQVEG ETRIGVFAAR FIEVGEPLTY DYRFVLFGSE VKCHCGASNC QGYLGSKKKI TSKLDISWGS KRKRTSTSCL TIIKSNSC
001: MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD
Arabidopsis Description
ASHR3SDG4 [Source:UniProtKB/TrEMBL;Acc:A0A178UX33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.