Factsheet for PGSC0003DMT400028500

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008460.2.1	Tomato	nucleus	89.53	79.42
PGSC0003DMT400028514	Potato	nucleus	39.4	70.54
PGSC0003DMT400086207	Potato	nucleus	39.65	63.86
PGSC0003DMT400059166	Potato	nucleus	43.89	57.89
PGSC0003DMT400059198	Potato	nucleus	48.88	54.75
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	45.89	49.07
VIT_18s0072g00220.t01	Wine grape	nucleus	44.14	47.84
CDX67669	Canola	cytosol, nucleus, plastid	28.18	43.97
KRH35109	Soybean	nucleus	52.62	43.96
CDX87571	Canola	nucleus	50.12	43.6
VIT_18s0072g00200.t01	Wine grape	nucleus	55.86	43.5
Bra015723.1-P	Field mustard	nucleus	49.88	43.38
CDX88310	Canola	nucleus	49.38	42.95
KRG91687	Soybean	nucleus	52.37	42.34
AT1G76710.3	Thale cress	nucleus	52.62	40.66
Os04t0429100-01	Rice	nucleus	51.12	39.58
GSMUA_Achr10P...	Banana	nucleus	53.62	39.16
Zm00001d003679_P006	Maize	nucleus	49.63	38.79
TraesCS2A01G302100.1	Wheat	nucleus	48.13	38.45
EES10812	Sorghum	nucleus	49.88	38.39
TraesCS2D01G300800.1	Wheat	nucleus	47.88	38.25
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	47.63	37.9
TraesCS2B01G317900.1	Wheat	nucleus	48.13	36.48
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	13.22	28.19
PGSC0003DMT400010951	Potato	cytosol	14.46	25.22
PGSC0003DMT400046777	Potato	nucleus	14.46	9.02
PGSC0003DMT400023342	Potato	nucleus	12.47	6.03
PGSC0003DMT400084490	Potato	nucleus	12.47	5.42
PGSC0003DMT400010235	Potato	nucleus	8.98	4.4
PGSC0003DMT400023546	Potato	nucleus	1.75	0.99

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:IPR001214	InterPro:IPR003616
UniProt:M1AR81	PFAM:PF00856	EnsemblPlantsGene:PGSC0003DMG400010972	PGSC:PGSC0003DMG400010972	EnsemblPlants:PGSC0003DMT400028500	PFscan:PS50280
PFscan:PS50868	PANTHER:PTHR45396	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF82199
UniParc:UPI0002958296	SEG:seg	:	:	:	:

Description

SET domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010972]

Coordinates

chr7:+:5331801..5337729

Molecular Weight (calculated)

44592.2 Da

IEP (calculated)

5.540

GRAVY (calculated)

-0.537

Length

401 amino acids

Sequence
(BLAST)

001: MEILLSAVFE SDSECHLDNC WYIILKCFAC CPQRFQKCEY AKTKLFRTEG RGWGLLADEN IKAGQFIIEY CGEVISSEEA KKRSQSYEAH GLKDAYIISL
101: DANHFIDATR KGSFARFINH SCSPNCETRK WTVLGETRVG IFAKQDISIG MELAYNYNFE WYGGATVQCL CGAANCSIFL GAKSQGFQEY NHVWEDGDVR
201: YTVEEVPLYD SAEDDSLPVI SGTSGGNEQN KILNDSEGST LKLEPSNTTC KSFNIGSGST PKKKAQRLPK RKVKSSSRKQ VNGGDFAKLF ASKEAREEVT
301: MYEGLKNEAT SKLNSVYEEI RPTIEEHGQD NQDSVPTSVA EMWIEAHCSK YKADFDLYFS VIKNVMYPRP ATYTTAAGPS EGGARPQTAN AEPKLSEGGA
401: K

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.