Factsheet for Solyc07g008460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028500	Potato	nucleus	79.42	89.53
PGSC0003DMT400028514	Potato	nucleus	34.73	70.09
Solyc07g008580.1.1	Tomato	nucleus	41.59	67.63
Solyc09g060000.1.1	Tomato	nucleus	38.27	65.78
PGSC0003DMT400086207	Potato	nucleus	34.96	63.45
Solyc07g008500.1.1	Tomato	nucleus	38.94	61.11
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	46.68	56.27
VIT_18s0072g00220.t01	Wine grape	nucleus	44.91	54.86
CDX67669	Canola	cytosol, nucleus, plastid	31.19	54.86
CDX87571	Canola	nucleus	53.32	52.28
Bra015723.1-P	Field mustard	nucleus	53.1	52.06
KRH35109	Soybean	nucleus	55.09	51.88
CDX88310	Canola	nucleus	52.65	51.63
VIT_18s0072g00200.t01	Wine grape	nucleus	57.08	50.1
KRG91687	Soybean	nucleus	54.87	50.0
AT1G76710.3	Thale cress	nucleus	55.31	48.17
Os04t0429100-01	Rice	nucleus	53.98	47.1
GSMUA_Achr10P...	Banana	nucleus	56.86	46.81
Zm00001d003679_P006	Maize	nucleus	51.99	45.81
EES10812	Sorghum	nucleus	52.65	45.68
TraesCS2A01G302100.1	Wheat	nucleus	50.66	45.62
TraesCS2D01G300800.1	Wheat	nucleus	50.22	45.22
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	50.22	45.04
TraesCS2B01G317900.1	Wheat	nucleus	50.66	43.29
Solyc07g006060.2.1	Tomato	nucleus	18.81	34.55
Solyc12g100290.1.1	Tomato	nucleus	22.35	23.27
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	21.24	21.29
Solyc02g093200.2.1	Tomato	endoplasmic reticulum, vacuole	13.5	13.17
Solyc03g112690.1.1	Tomato	nucleus	14.6	10.25
Solyc09g098260.1.1	Tomato	nucleus	13.27	10.2
Solyc04g057880.2.1	Tomato	nucleus	27.43	8.88
Solyc06g059960.2.1	Tomato	nucleus	28.54	7.75
Solyc01g079390.2.1	Tomato	nucleus	13.72	7.48
Solyc03g044380.2.1	Tomato	nucleus	13.94	6.84
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	14.6	6.73
Solyc01g095890.2.1	Tomato	nucleus	15.27	6.58
Solyc01g006880.2.1	Tomato	nucleus	13.5	3.82
Solyc09g098250.2.1	Tomato	nucleus	0.66	0.41
Solyc02g093190.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:IPR001214
InterPro:IPR003616	InterPro:IPR006560	UniProt:K4CBW5	PFAM:PF00856	PFscan:PS50280	PFscan:PS50868
PFscan:PS51215	PANTHER:PTHR45396	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00570
SUPFAM:SSF82199	EnsemblPlantsGene:Solyc07g008460.2	EnsemblPlants:Solyc07g008460.2.1	UniParc:UPI000276B40A	SEG:seg	:

Description

No Description!

Coordinates

chr7:+:3363412..3374716

Molecular Weight (calculated)

50327.9 Da

IEP (calculated)

5.550

GRAVY (calculated)

-0.563

Length

452 amino acids

Sequence
(BLAST)

001: MLHSEEDKCN VVQLPEGVTP FIYITQNEFL GRKHKKLKED DIAICECKYD ASVPESACVE RCLNVITNTE CTPGYCQCGA TCRNQRFQKC EYAKTKLFRT
101: EGRGWGLLAD ENIKAGQFII EYCGEVISSE EAKKRSQAYE AHGLKDAYII SLDANHFIDA TRKGSFARFI NHSCWPNCET RKWTVLGETR VGIFAKQDIS
201: IGMELAYDYN FEWYGGATVQ CLCGAANCSI FLGAKSQGFQ EYNHVWEDGD VRYTVEEVPL YDSAEDDSLP VIAGTGGGNE QTKILNDSEG STLKLEPSNT
301: TCKSFNIGSG STPKKTAQRL PKRKVKSSSR KQVNDGDFAK LFASKEAREE VTMYEGLKNE ATSKLNSVYE EIRPTIEEHG RDNQDSVPTS VAETWIEAHC
401: SKYKADFDLY FSVIKNVMHP RPATYTTAAA PSEGGAVPQM TNAEPKLSQG AK

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.