Factsheet for Solyc01g006220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
endoplasmic reticulum 3
nucleus 2
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010951	Potato	cytosol	39.47	77.39
Solyc12g100290.1.1	Tomato	nucleus	61.2	63.59
AT2G44150.1	Thale cress	nucleus	49.22	61.16
Bra004809.1-P	Field mustard	nucleus	49.0	59.73
CDX79778	Canola	cytosol	48.12	59.45
VIT_16s0039g00740.t01	Wine grape	mitochondrion	59.42	59.03
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	49.0	58.62
GSMUA_Achr2P12180_001	Banana	nucleus	47.89	57.91
Bra000343.1-P	Field mustard	cytosol	45.68	56.91
CDY41194	Canola	nucleus	43.02	55.91
CDX95590	Canola	nucleus	45.23	55.89
CDX83438	Canola	cytosol	45.68	55.83
Bra007496.1-P	Field mustard	nucleus	41.91	54.94
AT3G59960.1	Thale cress	nucleus	39.47	54.1
CDX98400	Canola	nucleus	37.69	52.96
CDX71856	Canola	nucleus	41.91	52.5
CDX67818	Canola	nucleus	36.81	51.71
Bra003396.1-P	Field mustard	cytosol	29.49	51.35
Os09t0307800-01	Rice	cytosol	37.92	50.29
TraesCS7A01G453700.1	Wheat	nucleus	37.03	49.41
TraesCS7B01G354300.1	Wheat	nucleus	37.03	49.12
TraesCS7D01G443000.1	Wheat	nucleus	36.81	49.11
KRH75137	Soybean	cytosol	13.75	48.82
TraesCS5D01G184500.1	Wheat	nucleus	37.69	47.89
Zm00001d005563_P006	Maize	nucleus	35.03	46.61
TraesCS5B01G177800.2	Wheat	nucleus	37.25	46.41
TraesCS5A01G179900.1	Wheat	nucleus	37.03	46.13
Zm00001d020038_P001	Maize	nucleus	35.26	44.66
Solyc07g006060.2.1	Tomato	nucleus	23.95	43.9
HORVU5Hr1G054880.2	Barley	mitochondrion	36.81	43.34
OQU89246	Sorghum	nucleus	34.81	42.09
HORVU7Hr1G103420.7	Barley	nucleus	37.03	40.44
Solyc07g008580.1.1	Tomato	nucleus	18.63	30.22
Solyc09g060000.1.1	Tomato	nucleus	14.86	25.48
Solyc07g008500.1.1	Tomato	nucleus	14.41	22.57
Solyc07g008460.2.1	Tomato	nucleus	21.29	21.24
Solyc02g093200.2.1	Tomato	endoplasmic reticulum, vacuole	11.75	11.45
Solyc09g098260.1.1	Tomato	nucleus	12.86	9.86
Solyc03g112690.1.1	Tomato	nucleus	13.97	9.78
Solyc04g057880.2.1	Tomato	nucleus	25.06	8.09
Solyc01g079390.2.1	Tomato	nucleus	13.08	7.12
Solyc06g059960.2.1	Tomato	nucleus	25.06	6.79
Solyc03g044380.2.1	Tomato	nucleus	13.53	6.62
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	13.3	6.12
Solyc01g095890.2.1	Tomato	nucleus	13.53	5.82
Solyc01g006880.2.1	Tomato	nucleus	14.19	4.01
Solyc02g093190.2.1	Tomato	nucleus	0.67	0.89
Solyc09g098250.2.1	Tomato	nucleus	0.67	0.41

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_SET2_plant
InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787	UniProt:K4ASI8	PFAM:PF00856
PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884	InterPro:Post-SET_dom
InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199	EnsemblPlantsGene:Solyc01g006220.2
EnsemblPlants:Solyc01g006220.2.1	UniParc:UPI00027620AF	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:839826..851722

Molecular Weight (calculated)

50887.0 Da

IEP (calculated)

7.907

GRAVY (calculated)

-0.409

Length

451 amino acids

Sequence
(BLAST)

001: MKTIYTLCVI EKTTLNNILS LPLFSIAFCC SEPFFSPAIA GDDDHFPPIK ATVNECCYLI EPMPATPMKK SATRGGIGNV FNKLTSKIGD PVDFELPDWL
101: SKWQPTPYPY TSIRRNIYLT NKGKRRLEDD GISCTCSSTA ESSDVCGMDC LCSMLWSSCT SGCKCGSSCL NKPFHQRPVK KMKIVKTEKC GTGIVADEDI
201: KTKEFVVEYV GEVIDDKTCE ERLWKLKHSG ETNFYLCEIN RDMVIDATYK GNKSRYINHS CCPNTEMQRW MIDGENRIGI FATRDIKRGE HLTYDYQFVQ
301: FGADQDCHCG AINCKRKLGI RPNKLKLPSS DAAALKLVAC QVAAPFPKEK VLLSAKHDSQ TEVPPKGNWS SDSARKIQHP RNCTGQIIRI IRYSDQSPVD
401: SLESRIPDVS SSFGIIKQFD RITKKHLIMF EDGSTEHLDL SKEDWRFCNF A

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.