Factsheet for Solyc07g006060.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30860.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT4G30860.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT4G30860.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT4G30860.1	Solyc06g072990.1.1	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	54.47	71.28
HORVU3Hr1G083480.1	Barley	nucleus, peroxisome	47.56	49.37
OQU80550	Sorghum	nucleus	49.19	37.35
VIT_11s0037g00880.t01	Wine grape	nucleus	73.17	36.44
KRH54981	Soybean	plastid	75.2	35.17
GSMUA_Achr7P16220_001	Banana	nucleus	67.48	33.2
CDY36467	Canola	nucleus	66.67	33.13
Bra010270.1-P	Field mustard	nucleus	66.26	33.0
AT4G30860.1	Thale cress	nucleus	65.85	32.6
CDY23260	Canola	nucleus	65.45	32.59
GSMUA_Achr6P30890_001	Banana	mitochondrion	66.67	30.54
Solyc07g008580.1.1	Tomato	nucleus	33.74	29.86
Zm00001d051057_P002	Maize	nucleus	53.25	27.75
Solyc12g100290.1.1	Tomato	nucleus	47.97	27.19
Solyc09g060000.1.1	Tomato	nucleus	28.86	27.0
KXG30618	Sorghum	nucleus	63.41	26.58
TraesCS3D01G369900.1	Wheat	plastid	47.56	25.94
Zm00001d032143_P001	Maize	mitochondrion, nucleus, plastid	49.59	24.45
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	43.9	23.95
Solyc07g008500.1.1	Tomato	nucleus	27.24	23.26
TraesCS6B01G249100.1	Wheat	nucleus	66.26	21.85
TraesCS6D01G202600.1	Wheat	nucleus	66.26	21.36
TraesCS6A01G219600.1	Wheat	nucleus	66.26	21.25
Solyc07g008460.2.1	Tomato	nucleus	34.55	18.81
Solyc02g093200.2.1	Tomato	endoplasmic reticulum, vacuole	21.14	11.23
Solyc09g098260.1.1	Tomato	nucleus	23.17	9.69
Solyc03g112690.1.1	Tomato	nucleus	23.58	9.01
Solyc01g079390.2.1	Tomato	nucleus	25.61	7.6
Solyc04g057880.2.1	Tomato	nucleus	39.02	6.88
Solyc03g044380.2.1	Tomato	nucleus	24.39	6.51
Solyc01g095890.2.1	Tomato	nucleus	25.2	5.92
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	23.58	5.91
Solyc06g059960.2.1	Tomato	nucleus	39.02	5.77
Solyc01g006880.2.1	Tomato	nucleus	24.8	3.82
Solyc09g098250.2.1	Tomato	nucleus	1.22	0.41
Solyc02g093190.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom	GO:GO:0000785	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR025787	UniProt:K4CB77
PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884
PANTHER:PTHR22884:SF455	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SUPFAM:SSF82199
EnsemblPlantsGene:Solyc07g006060.2	EnsemblPlants:Solyc07g006060.2.1	UniParc:UPI000276C3A7	:	:	:

Description

No Description!

Coordinates

chr7:+:902620..910635

Molecular Weight (calculated)

28071.9 Da

IEP (calculated)

8.723

GRAVY (calculated)

-0.437

Length

246 amino acids

Sequence
(BLAST)

001: MIDNRSEPPP YVHIKRNAYL IKKKRDGVIA DIGCTHCKST ECSDNCVCRV QCISCSKACR CSDMCSNRPF RRDRKMQVVK TELCGWGVVA SESINKGDFI
101: IEYIGEVIDD ALCEKRLWDM KYKGVQNFYM CELRKDFTID ATFKGNLSRF LNHSCDPNCK LEKWQVEGET RVGVFAARYI EVGEPLTYDY RFVQFGSEVK
201: CHCGASKCQG YLGSKKKITS KLDISWGSKR KRTSTSCLAI VKSNSF

Best Arabidopsis Sequence Match ( AT4G30860.1 )
(BLAST)

001: MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD

Arabidopsis Description

ASHR3SDG4 [Source:UniProtKB/TrEMBL;Acc:A0A178UX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.