CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G30860.1	KRH16959	AT3G49580.1	21798944
AT4G30860.1	KRH53667	AT3G49580.1	21798944
AT4G30860.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006060.2.1	Tomato	nucleus	35.17	75.2
VIT_11s0037g00880.t01	Wine grape	nucleus	60.08	63.97
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	22.81	63.83
AT4G30860.1	Thale cress	nucleus	53.99	57.14
HORVU3Hr1G083480.1	Barley	nucleus, peroxisome	25.48	56.54
Bra010270.1-P	Field mustard	nucleus	51.52	54.86
CDY23260	Canola	nucleus	51.52	54.86
CDY36467	Canola	nucleus	51.52	54.75
GSMUA_Achr7P16220_001	Banana	nucleus	50.95	53.6
OQU80550	Sorghum	nucleus	31.18	50.62
GSMUA_Achr6P30890_001	Banana	mitochondrion	49.24	48.23
Zm00001d051057_P002	Maize	nucleus	40.49	45.13
KXG30618	Sorghum	nucleus	44.68	40.03
KRH38763	Soybean	cytosol	24.14	36.39
KRH09264	Soybean	nucleus	23.95	36.1
TraesCS3D01G369900.1	Wheat	plastid	30.8	35.92
Zm00001d032143_P001	Maize	mitochondrion, nucleus, plastid	33.65	35.47
KRH75137	Soybean	cytosol	8.56	35.43
TraesCS6B01G249100.1	Wheat	nucleus	46.58	32.84
TraesCS6D01G202600.1	Wheat	nucleus	46.58	32.11
TraesCS6A01G219600.1	Wheat	nucleus	46.58	31.94
KRH35109	Soybean	nucleus	16.92	18.54
KRG91687	Soybean	nucleus	16.73	17.74
KRG94193	Soybean	cytosol, nucleus	12.36	12.24
KRG96530	Soybean	cytosol, nucleus	12.93	10.03
KRH28654	Soybean	nucleus	13.12	9.86
KRH68267	Soybean	nucleus	13.88	9.81
KRH28444	Soybean	nucleus	15.21	9.29
KRH77020	Soybean	nucleus	15.21	9.29
KRH68336	Soybean	nucleus	14.26	9.21
KRH31789	Soybean	nucleus	15.21	9.2
KRH69214	Soybean	nucleus	14.83	8.99
KRH64461	Soybean	nucleus	18.06	8.96
KRH68208	Soybean	nucleus	16.16	8.65
KRH53486	Soybean	nucleus	17.49	8.62
KRG96460	Soybean	cytosol, mitochondrion, nucleus, plastid	15.97	8.52
KRH47912	Soybean	nucleus	15.97	8.49
KRH06474	Soybean	nucleus	15.78	8.41
KRH45215	Soybean	nucleus	14.07	6.8
KRH12193	Soybean	nucleus	15.78	6.77
KRH37214	Soybean	nucleus	15.59	6.68
KRH01524	Soybean	nucleus	13.69	6.62
KRH53306	Soybean	nucleus	23.76	6.13
KRH64610	Soybean	nucleus	23.0	5.81
KRH15817	Soybean	nucleus	16.54	4.33
KRH05241	Soybean	nucleus	16.35	4.23
KRG94170	Soybean	nucleus	3.42	3.78

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:100791481	MapMan:12.3.3.4	Gene3D:2.170.270.10	Gene3D:3.30.40.10	EMBL:ACUP02003674
InterPro:AWS_dom	EnsemblPlantsGene:GLYMA_06G223300	GO:GO:0000785	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	InterPro:IPR013083	InterPro:IPR025787
UniProt:K7KWM0	EnsemblPlants:KRH54981	ProteinID:KRH54981	ProteinID:KRH54981.1	PFAM:PF00856	PFscan:PS50280
PFscan:PS50868	PFscan:PS51215	PFscan:PS51578	PANTHER:PTHR22884	PANTHER:PTHR22884:SF455	InterPro:Post-SET_dom
InterPro:SET_dom	SMART:SM00317	SMART:SM00508	SUPFAM:SSF82199	TMHMM:TMhelix	UniParc:UPI00029675AA
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:29529442..29549415

Molecular Weight (calculated)

59155.3 Da

IEP (calculated)

8.356

GRAVY (calculated)

-0.265

Length

526 amino acids

Sequence
(BLAST)

001: MPPWVVSHHP LKITKPHFPA HFYLLLLLFF SSSASPFSLC IFSLPSASVG KFPLRVSAMP DLGNLSLSAP LTLSRCSSND ALDAPVKTLP NAFSSEPGSE
101: PAFEPRVLKR TRGSLDRVKK PPIADKAFQD RLKDLPFLVG APMMEECCFC CHFIYPGDDE LLCSVRGCDA RYHSECAKDA VGASNLKKFK CPQHVCFICK
201: LKKQFRCVRC KIAFHSKCAP WSDSVVQLKD HPGQAVCWRH PSDWRLDRKT DASTSDISEV FCRLPLPFIS EEFKIDFTWK DMDNKMEQPS PYVHIRRNIY
301: LVKKKRSDAD DGAGCTSCSS TSTCSDDCVC RVQCISCSKA CRCSENCNNR PFRKEKKIKI VKTELCGWGV EAAETIDKGG FIIEYIGEVI DDALCEKRLW
401: DMKYRGVQNF YMCEIRKDFT IDATFKGNTS RFLNHSCDPN CVLEKWQVDG ETRVGVFAAC SIEAGEPLTY DYRFVQFGPE VKCHCGAANC QGFLGTKKKI
501: GKLDLYWGSK RKRTSKASCI TLVTAV

Best Arabidopsis Sequence Match ( AT4G30860.1 )
(BLAST)

001: MLDLGNMSMS ASVALTCCPS FLPAASGPEL AKSINSPENL AGECNGKHLP MIPPEEEVKD IKIANGVTAF TRKQNPSDRV KKGFVLDDHV KDWVKRRVAS
101: GVSESTCFLP FLVGAKKMVD CLVCHKPVYP GEDLSCSVRG CQGAYHSLCA KESLGFSKSS KFKCPQHECF VCKQRTQWRC VKCPMAAHDK HSPWSKEILH
201: LKDQPGRAVC WRHPTDWRLD TKHAVAQSEI EEVFCQLPLP YVEEEFKIDL AWKDSVVKED PPSYVHIRRN IYLVKKKRDN ANDGVGCTNC GPNCDRSCVC
301: RVQCISCSKG CSCPESCGNR PFRKEKKIKI VKTEHCGWGV EAAESINKED FIVEYIGEVI SDAQCEQRLW DMKHKGMKDF YMCEIQKDFT IDATFKGNAS
401: RFLNHSCNPN CVLEKWQVEG ETRVGVFAAR QIEAGEPLTY DYRFVQFGPE VKCNCGSENC QGYLGTKRKE PNCLVVSWGA KRRRLFHRPI ARKPQQD

Arabidopsis Description

ASHR3SDG4 [Source:UniProtKB/TrEMBL;Acc:A0A178UX33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.