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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:mitochondrion
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
 nucleus: 21132161
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH53486 Soybean nucleus 95.47 94.85
VIT_16s0022g01290.t01 Wine grape cytosol, nucleus, plastid 4.81 94.44
KRG94193 Soybean cytosol, nucleus 41.51 82.86
Os01t0655300-01 Rice cytosol, nucleus 3.77 76.92
CDY29869 Canola mitochondrion 62.08 68.76
AT4G27910.1 Thale cress nucleus 66.23 68.35
VIT_16s0098g00350.t01 Wine grape nucleus 69.34 68.12
AT5G53430.1 Thale cress nucleus 65.47 66.54
Bra040838.1-P Field mustard mitochondrion, nucleus 58.49 66.52
CDY35655 Canola nucleus 60.66 66.02
KRG94170 Soybean nucleus 29.62 65.97
CDY14381 Canola nucleus 60.57 65.91
Solyc03g083410.2.1 Tomato mitochondrion, nucleus 59.81 64.63
CDX92851 Canola mitochondrion 55.57 64.3
Bra003056.1-P Field mustard nucleus 43.21 63.35
GSMUA_Achr10P... Banana nucleus 53.68 58.36
GSMUA_Achr2P06290_001 Banana nucleus 51.7 57.74
Zm00001d044020_P001 Maize cytosol 13.58 56.25
KRH47912 Soybean nucleus 51.89 55.61
KRH06474 Soybean nucleus 51.6 55.42
GSMUA_Achr8P28030_001 Banana nucleus 50.94 54.05
OQU87254 Sorghum nucleus 44.25 52.87
KRH68208 Soybean nucleus 47.36 51.07
TraesCS3D01G237600.2 Wheat nucleus 48.77 50.59
KRG96460 Soybean cytosol, mitochondrion, nucleus, plastid 46.98 50.51
TraesCS3B01G265800.1 Wheat nucleus 48.96 50.49
TraesCS3A01G237200.2 Wheat nucleus 48.96 50.49
HORVU3Hr1G059080.11 Barley cytosol, mitochondrion, nucleus, plastid 48.21 49.85
Zm00001d011490_P003 Maize nucleus 48.68 49.71
KRH75137 Soybean cytosol 2.55 21.26
KRH45215 Soybean nucleus 21.23 20.68
KRH01524 Soybean nucleus 21.23 20.68
KRH54981 Soybean plastid 8.96 18.06
KRH38763 Soybean cytosol 5.85 17.77
KRH09264 Soybean nucleus 5.75 17.48
KRG96530 Soybean cytosol, nucleus 9.15 14.31
KRH77020 Soybean nucleus 11.23 13.82
KRH28444 Soybean nucleus 11.04 13.59
KRH28654 Soybean nucleus 8.96 13.57
KRH68267 Soybean nucleus 9.25 13.17
KRH31789 Soybean nucleus 10.75 13.1
KRH69214 Soybean nucleus 10.66 13.02
KRH35109 Soybean nucleus 5.85 12.92
KRG91687 Soybean nucleus 5.85 12.5
KRH68336 Soybean nucleus 9.25 12.04
KRH12193 Soybean nucleus 11.51 9.95
KRH37214 Soybean nucleus 11.42 9.86
KRH15817 Soybean nucleus 15.09 7.97
KRH05241 Soybean nucleus 14.72 7.68
KRH53306 Soybean nucleus 10.75 5.59
KRH64610 Soybean nucleus 10.85 5.52
Protein Annotations
KEGG:00310+2.1.1.43EntrezGene:100808761MapMan:12.3.3.5Gene3D:2.170.270.10Gene3D:2.30.30.140Gene3D:3.30.40.10
EMBL:ACUP02002766InterPro:EPHDEnsemblPlantsGene:GLYMA_04G236500GO:GO:0003674GO:GO:0003824GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006464
GO:GO:0008150GO:GO:0008152GO:GO:0008168GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016043GO:GO:0016740GO:GO:0018024GO:GO:0019538GO:GO:0032259GO:GO:0034968
GO:GO:0046872InterPro:Hist-Lys_N-MeTrfase_ATXUniProt:I1JYS9InterPro:IPR000313InterPro:IPR001214InterPro:IPR003616
InterPro:IPR013083InterPro:IPR019787InterPro:IPR025780InterPro:IPR034732EnsemblPlants:KRH64461ProteinID:KRH64461
ProteinID:KRH64461.1PFAM:PF00628PFAM:PF00855PFAM:PF00856PFAM:PF13831PFAM:PF13832
ScanProsite:PS01359PFscan:PS50016PFscan:PS50280PFscan:PS50812PFscan:PS50868PFscan:PS51566
PFscan:PS51805PANTHER:PTHR13793PANTHER:PTHR13793:SF5InterPro:PWWP_domInterPro:Post-SET_domInterPro:SET_dom
SMART:SM00249SMART:SM00317SMART:SM00508SUPFAM:SSF57903SUPFAM:SSF63748SUPFAM:SSF82199
TMHMM:TMhelixUniParc:UPI000294FC63InterPro:Zinc_finger_PHD-type_CSInterPro:Znf_FYVE_PHDInterPro:Znf_PHDInterPro:Znf_PHD-finger
InterPro:Znf_RING/FYVE/PHDSEG:seg::::
Description
hypothetical protein
Coordinates
chr4:+:50488204..50501364
Molecular Weight (calculated)
120733.0 Da
IEP (calculated)
8.602
GRAVY (calculated)
-0.545
Length
1060 amino acids
Sequence
(BLAST)
0001: MIIKRNLKSQ MPSLKRVKLG DSVGEDDEYS YARKKRKTNS YYPLNLLGDV AAGVIPVSFH GLLGAGVAEK RFSASWCNGV ESNAKNDIVE VKKKNEVQRP
0101: PLVRTSRGRV QVLPSRFNDS VIDNWRKESK SSGGLRDCDY DEEFECKKEK FSFKAPKVCN NQKKGKSEEK TGSKARKYSA LCNGFGRSKC SSFRGDGALA
0201: LRRGGVAVEE DERRSFLEVE EVGLMGLKEK RNGLFGPEDF YAGDIVWAKA GRKEPFWPAI VIDPMTQAPE LVLRSCIADA ACVMFLGYAG NENQRDYAWV
0301: KHGMIFPFMD YVDRFQGQSE LSYYNPSDFQ MAIEEAFLAE RGFTEKLIAD INTAATNNGY DDSILKAFQE VSGTNQYAGY HFLNQDLFDK KETRPCEACG
0401: LSLPYKMLKK TKDSSPGGQF LCKTCARLTK SKHYCGICKK VWNHSDSGSW VRCDGCKVWV HAECDKICSN LFKNLEGTDY YCPTCKAKFD FELSDSEKPQ
0501: PKVKWSKNNG QLVLPNRVTV LCNGVEGIYF PSLHLVVCKC GFCRTEKQAL SEWERHTGSK LRNWRTSIRV KDSMLPLEQW MLQLAEFHAT AQVPTKPKKP
0601: SLKERKHKLL TFLQEKYEPV HAKWTTERCA VCRWVEDWDY NKIIICNRCQ IAVHQECYGA RNVRDFTSWV CKACERPDIK RECCLCPVKG GALKPTDVDT
0701: LWVHVTCAWF RPEVSFASDE KMEPALGILS IPSNSFVKIC VICKQIHGSC TQCCKCSTYF HAMCASRAGY RMELHCLEKN GKQTTKMVSY CAYHRAPNPD
0801: TVLIMQTPLG VISTKSLLQT KKKTGSRLIS SSRKKQDDSP VDNTEHEPFS AARCRIFQRT NHTKKRAADE AVSHRVRGPY HHPLDAIESL NTHRVVHEPQ
0901: AFSSFRERLY HLQRTENERV CFGRSGIHEW GLFARRNIQE GDMVLEYRGE QVRRSIADLR EARYRLEGKD CYLFKISEEV VVDATDKGNI ARLINHSCMP
1001: NCYARIMSVG DEESRIVLIA KTNVAAGDEL TYDYLFDPDE PEENKVPCLC KAPNCRKFMN
Best Arabidopsis Sequence Match ( AT5G53430.1 )
(BLAST)
0001: MIIKRKLKTL KRCNSTNEED DIVRKKRKVN LNGGGSGGDY YYPLNLLGEI GAGIVPGKNG FSVSLCKQVS CSPKVEVVEE EEEEEEIKST RLVSRPPLVK
0101: TSRGRVQVLP SRFNDSVIEN WRKDNKSSGE EREEEIEEEA CRKEKVKVSS NHSLKIKQQE TKFTPRNYKY SSSSALCGEI DDEDKCEEIV RYGNSFEMKK
0201: QRYVDDEPRP KKEGVYGPED FYSGDLVWGK SGRNEPFWPA IVIDPMTQAP ELVLRSCIPD AACVMFFGHS GTENERDYAW VRRGMIFPFV DYVERLQEQS
0301: ELRGCNPRDF QMALEEALLA DQGFTEKLMQ DIHMAAGNQT FDDSVYRWVE EAAGSSQYLD HVAPSQDMKK YRNPRACVGC GMVLSFKMAQ KMKALIPGDQ
0401: LLCQPCSKLT KPKHVCGICK RIWNHLDSQS WVRCDGCKVW IHSACDQISH KHFKDLGETD YYCPTCRTKF DFELSDSEKP DSKSKLGKNN APMVLPDKVI
0501: VVCSGVEGIY FPSLHLVVCK CGSCGPERKA LSEWERHTGS KAKNWRTSVK VKSSKLPLEE WMMKLAEFHA NATAAKPPKR PSIKQRKQRL LSFLREKYEP
0601: VNVKWTTERC AVCRWVEDWD YNKIIICNRC QIAVHQECYG TRNVRDFTSW VCKACETPEI KRECCLCPVK GGALKPTDVE TLWVHVTCAW FQPEVCFASE
0701: EKMEPALGIL SIPSSNFVKI CVICKQIHGS CTQCCKCSTY YHAMCASRAG YRMELHCLEK NGRQITKMVS YCSYHRAPNP DTVLIIQTPS GVFSAKSLVQ
0801: NKKKSGTRLI LANREEIEES AAEDTIPIDP FSSARCRLYK RTVNSKKRTK EEGIPHYTGG LRHHPSAAIQ TLNAFRHVAE EPKSFSSFRE RLHHLQRTEM
0901: ERVCFGRSGI HGWGLFARRN IQEGEMVLEY RGEQVRGIIA DLREARYRRE GKDCYLFKIS EEVVVDATEK GNIARLINHS CMPNCYARIM SVGDDESRIV
1001: LIAKTTVASC EELTYDYLFD PDEPDEFKVP CLCKSPNCRK FMN
Arabidopsis Description
ATX5Histone-lysine N-methyltransferase ATX5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ42]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.