Factsheet for TraesCS3D01G237600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G237200.2	Wheat	nucleus	98.92	98.35
TraesCS3B01G265800.1	Wheat	nucleus	98.63	98.05
HORVU3Hr1G059080.11	Barley	cytosol, mitochondrion, nucleus, plastid	95.89	95.61
Os01t0655300-01	Rice	cytosol, nucleus	4.6	90.38
VIT_16s0022g01290.t01	Wine grape	cytosol, nucleus, plastid	4.21	79.63
OQU87254	Sorghum	nucleus	67.81	78.13
Zm00001d011490_P003	Maize	nucleus	77.4	76.2
Zm00001d044020_P001	Maize	cytosol	18.69	74.61
GSMUA_Achr2P06290_001	Banana	nucleus	54.79	59.01
GSMUA_Achr8P28030_001	Banana	nucleus	52.35	53.55
CDY29869	Canola	mitochondrion	48.14	51.41
Solyc03g083410.2.1	Tomato	mitochondrion, nucleus	48.53	50.56
AT4G27910.1	Thale cress	nucleus	50.68	50.44
CDX92851	Canola	mitochondrion	44.32	49.45
CDY35655	Canola	nucleus	46.87	49.18
CDY14381	Canola	nucleus	46.77	49.08
Bra040838.1-P	Field mustard	mitochondrion, nucleus	44.72	49.03
KRH64461	Soybean	nucleus	50.59	48.77
Bra003056.1-P	Field mustard	nucleus	34.44	48.69
KRH53486	Soybean	nucleus	50.49	48.36
AT5G53430.1	Thale cress	nucleus	49.32	48.32
VIT_15s0046g00760.t01	Wine grape	nucleus	48.83	47.89
VIT_16s0098g00350.t01	Wine grape	nucleus	50.49	47.82
KRH47912	Soybean	nucleus	45.89	47.42
PGSC0003DMT400023546	Potato	nucleus	32.49	47.16
KRH06474	Soybean	nucleus	45.3	46.91
TraesCS3D01G144300.2	Wheat	plastid	45.6	46.88
Solyc01g095890.2.1	Tomato	nucleus	46.38	45.23
CDY25072	Canola	nucleus	42.17	44.11
CDX67860	Canola	nucleus	41.19	43.67
KRH68208	Soybean	nucleus	41.29	42.93
AT3G61740.1	Thale cress	nucleus	42.56	42.73
KRG96460	Soybean	cytosol, mitochondrion, nucleus, plastid	40.51	41.99
Bra003467.1-P	Field mustard	nucleus	38.75	38.26
TraesCS5D01G170100.5	Wheat	nucleus, plastid	21.33	19.29
TraesCS7D01G318100.1	Wheat	nucleus	7.63	18.35
TraesCS7D01G443000.1	Wheat	nucleus	6.07	18.34
TraesCS5D01G184500.1	Wheat	nucleus	6.36	18.31
TraesCS3D01G369900.1	Wheat	plastid	7.34	16.63
TraesCS7D01G127100.2	Wheat	nucleus	10.27	11.84
TraesCS2D01G300800.1	Wheat	nucleus	5.77	11.75
TraesCS7D01G127400.1	Wheat	nucleus	9.2	11.72
TraesCS6D01G202600.1	Wheat	nucleus	8.71	11.66
TraesCS4D01G184600.3	Wheat	nucleus, plastid	8.22	9.44
TraesCS5D01G051200.1	Wheat	nucleus, plastid	10.37	8.2
TraesCS5D01G366700.1	Wheat	plastid	14.38	7.59
TraesCS2D01G007100.1	Wheat	nucleus	8.81	4.91

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.5	Gene3D:2.170.270.10	Gene3D:2.30.30.140	Gene3D:3.30.40.10	InterPro:EPHD
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:Hist-Lys_N-MeTrfase_ATX	InterPro:IPR000313	InterPro:IPR001214
InterPro:IPR003616	InterPro:IPR013083	InterPro:IPR019787	InterPro:IPR025780	InterPro:IPR034732	PFAM:PF00855
PFAM:PF00856	PFAM:PF13831	PFAM:PF13832	ScanProsite:PS01359	PFscan:PS50016	PFscan:PS50280
PFscan:PS50812	PFscan:PS50868	PFscan:PS51566	PFscan:PS51805	PANTHER:PTHR13793	PANTHER:PTHR13793:SF5
InterPro:PWWP_dom	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00249	SMART:SM00317	SUPFAM:SSF57903
SUPFAM:SSF63748	SUPFAM:SSF82199	EnsemblPlantsGene:TraesCS3D01G237600	EnsemblPlants:TraesCS3D01G237600.2	InterPro:Zinc_finger_PHD-type_CS	InterPro:Znf_FYVE_PHD
InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	TIGR:cd15495	TIGR:cd15517	SEG:seg

Description

No Description!

Coordinates

chr3D:+:328693949..328702102

Molecular Weight (calculated)

116752.0 Da

IEP (calculated)

7.889

GRAVY (calculated)

-0.583

Length

1022 amino acids

Sequence
(BLAST)

0001: MIFKRTQRSE ILSLKRCNAE GEGGAGERRP KRQRGDDFFP VELLGHVPAS GIPYAAAGFR WCEEPEVASP AAAEPTPAAA ATRPPVVRTS RGRAQVLPSR
0101: FNDSVLIDPW KREKPAKPPA PPKVEQLVPK SKPLCRKGAI LDRTSALSEV DEEEEAQRYR VCQNFVASRK YSMSLSALTS LHDEPYHRNE LMEDEEEEED
0201: LQAQKEDLHW STEILYGDIV WARLGKRQPA WPGVVVDPAR QAAADAMPPQ PRGGAVLCVM LFGWRAEFSD EKKYVWVRQG GIFPFVDYID QFQGQTDLSS
0301: LKPGDFQRAL EEAFLADQGF SEVPMDDSTA GQPVVCQSCP DELEEVTGSN ELECQAQIKH YTSELQCESC GNCFPNKESN KLVYVMEQLA CKHCARILRS
0401: KEYCGICLKS WQHKCDRRWV CCHGCESWIH AECDKKCSNL KDLRDKSYFC LYCRVKRNSN LSSKKTNSPD DSKDNSAQKG RKPDRVGVIC FDMEGTYLPN
0501: LELISCHCAP CKGQKFLFNE WERHAGCRSK NWKSSIKMKE TLMPFGKWID QHQPSVCSTY PSKRSSQKLK KQQLLDLLNE PYDHVQVKWT TERCAVCRWV
0601: EDWDYNKIVI CNRCQIAVHQ ECYGVSGKQD FTSWICRACE TPEQKRDCCL CPVKGGALKP TNVDNLWVHV ACAWFQPQVA FASDELMEPA IGILSMAPLL
0701: FMKMCVICRQ IHGACTQCYR CSTYYHATCA SRAGYRMELH CLEKNGKQTT KMISYCAHHR RPNPDNVLII QTPAGTFSSK RLVQSSGTMA ASRLIRKDLP
0801: KDSASEVETI ENLCSARCRV YVRKELKRSR EAAMAHRVRG YCQHRWDEID SLNPRREERD PESFSTFKER LRYLQKTEHS RVCFGRSGIH RWGLFARRDI
0901: QEGEMVLEYR GEQVRRSVAD LREAQYRVQG KDCYLFKISE EVVVDATDKG NVARLINHSC TPNFYARIMS VGHDQSRIVL IAKRNVCAGE ELTYDYLFDP
1001: DEADDCKVPC LCQTADCRKF MN

Best Arabidopsis Sequence Match ( AT4G27910.1 )
(BLAST)

0001: MIIKRKFKTQ IPSLERCKLG NESRKKKRKL NLGGGGYYYP LNLLGEIAAG IVPGNGRNGF SASWCTEVTK PVEVEESLSK RRSDSGTVRD SPPAEVSRPP
0101: LVRTSRGRIQ VLPSRFNDSV LDNWRKDSKS DCDLEEEEIE CRNEKVVSFR VPKATNLKSK ELDRKSKYSA LCKEERFHEQ HNDEARARVD EKLPNKKGTF
0201: GPENFYSGDL VWAKSGRNEP FWPAIVIDPM TQAPELVLRS CIPDAACVVF FGHSGNENER DYAWVRRGMI FPFVDYVARF QEQPELQGCK PGNFQMALEE
0301: AFLADQGFTE KLMHDIHLAA GNSTFDDSFY RWIQETAVSN QELNNNAPRQ GLLKKHRNPL ACAGCETVIS FEMAKKMKDL IPGDQLLCKP CSRLTKSKHI
0401: CGICKKIRNH LDNKSWVRCD GCKVRIHAEC DQISDRHLKD LRETDYYCPT CRAKFNFDLS DSEKQNSKSK VAKGDGQMVL PDKVIVVCAG VEGVYFPRLH
0501: LVVCKCGSCG PKKKALSEWE RHTGSKSKNW KTSVKVKSSK LALEDWMMNL AELHANATAA KVPKRPSIKQ RKQRLLAFLS ETYEPVNAKW TTERCAVCRW
0601: VEDWDYNKII ICNRCQIAVH QECYGARHVR DFTSWVCKAC ERPDIKRECC LCPVKGGALK PTDVETLWVH VTCAWFQPEV CFASEEKMEP AVGILSIPST
0701: NFVKICVICK QIHGSCTQCC KCSTYYHAMC ASRAGYRMEL HCLEKNGQQI TKMVSYCAYH RAPNPDNVLI IQTPSGAFSA KSLVQNKKKG GSRLISLIRE
0801: DDEAPAENTI TCDPFSAARC RVFKRKINSK KRIEEEAIPH HTRGPRHHAS AAIQTLNTFR HVPEEPKSFS SFRERLHHLQ RTEMDRVCFG RSGIHGWGLF
0901: ARRNIQEGEM VLEYRGEQVR GSIADLREAR YRRVGKDCYL FKISEEVVVD ATDKGNIARL INHSCTPNCY ARIMSVGDEE SRIVLIAKAN VAVGEELTYD
1001: YLFDPDEAEE LKVPCLCKAP NCRKFMN

Arabidopsis Description

ATX4Histone-lysine N-methyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UVA2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.