Factsheet for TraesCS3D01G369900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
peroxisome 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G083480.1	Barley	nucleus, peroxisome	49.45	94.09
OQU80550	Sorghum	nucleus	47.89	66.67
Zm00001d032143_P001	Maize	mitochondrion, nucleus, plastid	63.86	57.72
Solyc07g006060.2.1	Tomato	nucleus	25.94	47.56
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	16.19	38.83
GSMUA_Achr7P16220_001	Banana	nucleus	40.13	36.2
VIT_11s0037g00880.t01	Wine grape	nucleus	38.58	35.22
GSMUA_Achr6P30890_001	Banana	mitochondrion	40.13	33.71
AT4G30860.1	Thale cress	nucleus	36.81	33.4
CDY23260	Canola	nucleus	36.14	33.0
CDY36467	Canola	nucleus	35.92	32.73
Bra010270.1-P	Field mustard	nucleus	35.7	32.59
KRH54981	Soybean	plastid	35.92	30.8
TraesCS7D01G443000.1	Wheat	nucleus	22.17	29.59
TraesCS5D01G184500.1	Wheat	nucleus	22.62	28.73
TraesCS6D01G202600.1	Wheat	nucleus	41.46	24.51
TraesCS2D01G300800.1	Wheat	nucleus	16.85	15.14
TraesCS7D01G318100.1	Wheat	nucleus	13.08	13.88
TraesCS3D01G144300.2	Wheat	plastid	17.07	7.75
TraesCS7D01G127400.1	Wheat	nucleus	13.75	7.73
TraesCS3D01G237600.2	Wheat	nucleus	16.63	7.34
TraesCS7D01G127100.2	Wheat	nucleus	13.75	6.99
TraesCS4D01G184600.3	Wheat	nucleus, plastid	13.3	6.74
TraesCS5D01G051200.1	Wheat	nucleus, plastid	18.63	6.5
TraesCS5D01G170100.5	Wheat	nucleus, plastid	15.08	6.02
TraesCS2D01G007100.1	Wheat	nucleus	21.51	5.29
TraesCS5D01G366700.1	Wheat	plastid	18.63	4.33

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560
InterPro:IPR025787	PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578
PANTHER:PTHR22884	PANTHER:PTHR22884:SF455	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SUPFAM:SSF82199
EnsemblPlantsGene:TraesCS3D01G369900	EnsemblPlants:TraesCS3D01G369900.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3D:-:482597141..482604630

Molecular Weight (calculated)

50431.4 Da

IEP (calculated)

8.950

GRAVY (calculated)

-0.576

Length

451 amino acids

Sequence
(BLAST)

001: MAGPPRPAPA APPVRRSARL RPQATHQPPC SPPPPSPPAA AGSPGGTDPR RSVRISVRTR VRGLPSAAPS SSRIRRKSPA APLRRTVQAC AEEWGAAKAA
101: SGAPAEECVL PFLQKGAPRK VECLICSRSI LPDERTRCSG HHCEVTLHKA CSEQSDGSCP RHICFHCKRR TTWHRLKHVM PACTQCSLHQ NRMTGSVDPS
201: KLMISWSIWP STSEEAFRRL PLPYADQEFN INPIRKEELE SVTKPPPYVH LKHNVYFVKK KCDGDVIEAK CSDCDPPLTC QIRCSCRSVS ISCSQACKCS
301: NKCSNRPFRR EKRIGVVKTQ HCGWGAIALE TIEEGDFVIE FVGEVIDGAR CEERLQDMKK RRDQNFYMCK VNNNFIIDAT FRGNDCRFFN HSCRPNCQLE
401: NWQVNGKTRL GVFSLQGIQV GEPLTYNYSF QQHFGPQTEC FCGAENCRGK L

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.