Factsheet for TraesCS5D01G184500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G443000.1	Wheat	nucleus	88.73	93.2
TraesCS7A01G453700.1	Wheat	nucleus	88.17	92.6
HORVU5Hr1G054880.2	Barley	mitochondrion	91.83	85.12
HORVU7Hr1G103420.7	Barley	nucleus	89.01	76.51
Os09t0307800-01	Rice	cytosol	71.83	75.0
Zm00001d005563_P006	Maize	nucleus	61.97	64.9
Zm00001d020038_P001	Maize	nucleus	62.25	62.08
GSMUA_Achr1P23230_001	Banana	cytosol	51.55	61.0
OQU89246	Sorghum	nucleus	62.25	59.25
AT2G44150.1	Thale cress	nucleus	52.11	50.96
KRH38763	Soybean	cytosol	49.86	50.72
KRH09264	Soybean	nucleus	49.86	50.72
CDX79778	Canola	cytosol	49.58	48.22
Bra004809.1-P	Field mustard	nucleus	49.86	47.84
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.7	47.75
AT3G59960.1	Thale cress	nucleus	43.66	47.11
Bra007496.1-P	Field mustard	nucleus	45.07	46.51
CDY41194	Canola	nucleus	45.07	46.11
Bra000343.1-P	Field mustard	cytosol	45.92	45.03
KRH75137	Soybean	cytosol	16.06	44.88
CDX71856	Canola	nucleus	45.07	44.44
CDX83438	Canola	cytosol	45.92	44.17
CDX98400	Canola	nucleus	39.44	43.61
CDX95590	Canola	nucleus	44.79	43.56
PGSC0003DMT400010951	Potato	cytosol	28.17	43.48
CDX67818	Canola	nucleus	38.87	42.99
Bra003396.1-P	Field mustard	cytosol	30.7	42.08
VIT_16s0039g00740.t01	Wine grape	mitochondrion	50.99	39.87
Solyc12g100290.1.1	Tomato	nucleus	48.73	39.86
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	47.89	37.69
TraesCS3D01G369900.1	Wheat	plastid	28.73	22.62
TraesCS2D01G300800.1	Wheat	nucleus	26.76	18.92
TraesCS6D01G202600.1	Wheat	nucleus	35.21	16.38
TraesCS7D01G318100.1	Wheat	nucleus	16.62	13.88
TraesCS7D01G127400.1	Wheat	nucleus	15.77	6.98
TraesCS7D01G127100.2	Wheat	nucleus	16.9	6.76
TraesCS4D01G184600.3	Wheat	nucleus, plastid	16.9	6.74
TraesCS3D01G144300.2	Wheat	plastid	18.03	6.44
TraesCS3D01G237600.2	Wheat	nucleus	18.31	6.36
TraesCS5D01G170100.5	Wheat	nucleus, plastid	17.75	5.58
TraesCS2D01G007100.1	Wheat	nucleus	28.45	5.51
TraesCS5D01G051200.1	Wheat	nucleus, plastid	18.03	4.95
TraesCS5D01G366700.1	Wheat	plastid	19.72	3.61

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	InterPro:Hist-Lys_N-MeTrfase_SET2_plant	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560
InterPro:IPR025787	PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PFscan:PS51578
PANTHER:PTHR22884	PANTHER:PTHR22884:SF455	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508
SMART:SM00570	SUPFAM:SSF82199	EnsemblPlantsGene:TraesCS5D01G184500	EnsemblPlants:TraesCS5D01G184500.1	SEG:seg	:

Description

No Description!

Coordinates

chr5D:-:286188398..286196977

Molecular Weight (calculated)

40557.8 Da

IEP (calculated)

5.541

GRAVY (calculated)

-0.609

Length

355 amino acids

Sequence
(BLAST)

001: MLAESRSDAG ATAACSRSSP TRGSWGPERV FDELTKALKD PADFVDFDLP SALKEWKLGY YIPIKRNVYL TKKRVEDDGI FCSCSLSSGS SVTCGKDCQC
101: GMLFSCCSSN CKCENNCANK SFQLRPLFKT KLIKTEKCGF GLIAEEEIKK GEFVIEYVGE VIDDRTCEER LWKMKRQRYT NFYLCEVSSN MVIDATNKGN
201: KSRFINHSCE PNTEMQKWTV DGETRVGIFA LRDIQRGEEL TYDYKFVQFG ADQDCHCGSS NCRKMVGTSK SVNSFILHNG NSTSSQDQHD MKKRKTTSDN
301: CIGEIIRLWD RRDKMYVPAV VHDYDEYTGM HTLLLDEETT ENFDMREEDW DFLPA

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.