Factsheet for PGSC0003DMT400010951

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75137	Soybean	cytosol	28.7	51.97
AT2G44150.1	Thale cress	nucleus	63.48	40.22
Bra004809.1-P	Field mustard	nucleus	64.35	40.0
CDX79778	Canola	cytosol	63.48	40.0
Solyc01g006220.2.1	Tomato	endoplasmic reticulum	77.39	39.47
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.91	38.99
GSMUA_Achr2P12180_001	Banana	nucleus	62.17	38.34
Bra003396.1-P	Field mustard	cytosol	42.17	37.45
VIT_16s0039g00740.t01	Wine grape	mitochondrion	73.91	37.44
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	30.43	37.23
CDY41194	Canola	nucleus	56.09	37.18
Bra007496.1-P	Field mustard	nucleus	54.78	36.63
Bra000343.1-P	Field mustard	cytosol	57.39	36.46
CDX95590	Canola	nucleus	57.39	36.16
CDX83438	Canola	cytosol	57.83	36.04
CDX71856	Canola	nucleus	55.65	35.56
AT3G59960.1	Thale cress	nucleus	47.39	33.13
CDX98400	Canola	nucleus	43.04	30.84
CDX67818	Canola	nucleus	42.17	30.22
TraesCS7A01G453700.1	Wheat	nucleus	43.48	29.59
TraesCS7B01G354300.1	Wheat	nucleus	43.04	29.12
TraesCS7D01G443000.1	Wheat	nucleus	42.61	28.99
Os09t0307800-01	Rice	cytosol	42.61	28.82
TraesCS5D01G184500.1	Wheat	nucleus	43.48	28.17
TraesCS5B01G177800.2	Wheat	nucleus	43.91	27.9
Zm00001d005563_P006	Maize	nucleus	40.43	27.43
TraesCS5A01G179900.1	Wheat	nucleus	43.04	27.35
Zm00001d020038_P001	Maize	nucleus	40.87	26.4
HORVU5Hr1G054880.2	Barley	mitochondrion	42.17	25.33
OQU89246	Sorghum	nucleus	40.43	24.93
HORVU7Hr1G103420.7	Barley	nucleus	43.48	24.21
PGSC0003DMT400028514	Potato	nucleus	21.74	22.32
PGSC0003DMT400086207	Potato	nucleus	20.43	18.88
PGSC0003DMT400059166	Potato	nucleus	21.74	16.45
PGSC0003DMT400059198	Potato	nucleus	23.48	15.08
PGSC0003DMT400028500	Potato	nucleus	25.22	14.46
PGSC0003DMT400046777	Potato	nucleus	18.26	6.53
PGSC0003DMT400023342	Potato	nucleus	13.48	3.74
PGSC0003DMT400084490	Potato	nucleus	14.78	3.69
PGSC0003DMT400010235	Potato	nucleus	10.87	3.05
PGSC0003DMT400023546	Potato	nucleus	3.04	0.99

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:IPR001214	InterPro:IPR003616
UniProt:M0ZYU4	PFAM:PF00856	EnsemblPlantsGene:PGSC0003DMG400004289	PGSC:PGSC0003DMG400004289	EnsemblPlants:PGSC0003DMT400010951	PFscan:PS50280
PFscan:PS50868	PANTHER:PTHR22884	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00508
SUPFAM:SSF82199	UniParc:UPI0002958A1C	:	:	:	:

Description

SET domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004289]

Coordinates

chr12:+:60998508..61003619

Molecular Weight (calculated)

26222.7 Da

IEP (calculated)

8.781

GRAVY (calculated)

-0.394

Length

230 amino acids

Sequence
(BLAST)

001: MLTTAVIDDK TCEERLWKMK HSGETNFYLC EINRDMVIDA TYKGNKSRYI NHSCCPNTEM QKWMIDGETR IGIFATRDIK RGEHLTYDYQ FVQFGADQDC
101: HCGAVRCRRK LGVKPNKPKL PASDTALKIV ACQVAATSPK LKALLSTRHV YQNGVSPIGS SGYDSGIKIR RPRSCIGQVI RIICSSNTRS FGIVKQFDAI
201: TKKHLIMFED GCVRYLDLSK EDWEFCNFLE

Best Arabidopsis Sequence Match ( AT2G44150.1 )
(BLAST)

001: MPASKKISDR NHLGQVFDKL LNQIGESEEF ELPEWLNKGK PTPYIFIRRN IYLTKKVKRR VEDDGIFCSC SSSSPGSSST VCGSNCHCGM LFSSCSSSCK
101: CGSECNNKPF QQRHVKKMKL IQTEKCGSGI VAEEEIEAGE FIIEYVGEVI DDKTCEERLW KMKHRGETNF YLCEITRDMV IDATHKGNKS RYINHSCNPN
201: TQMQKWIIDG ETRIGIFATR GIKKGEHLTY DYQFVQFGAD QDCHCGAVGC RRKLGVKPSK PKIASDEAFN LVAHELAQTL PKVHQNGLVN RHIDAGKSWN
301: NLSQRDTCSR NCIGVVIRLS RPTSDRCFGL VRHFDEYSRK HSVMFEDGVT EFVDMSREDW EIV

Arabidopsis Description

ASHH3SDG7 [Source:UniProtKB/TrEMBL;Acc:A0A178VNH9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.