Factsheet for PGSC0003DMT400059198

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g060000.1.1	Tomato	nucleus	59.78	81.37
PGSC0003DMT400028514	Potato	nucleus	48.32	77.23
Solyc07g008500.1.1	Tomato	nucleus	58.38	72.57
PGSC0003DMT400086207	Potato	nucleus	44.41	63.86
PGSC0003DMT400059166	Potato	nucleus	50.28	59.21
CDX67669	Canola	cytosol, nucleus, plastid	36.59	50.97
PGSC0003DMT400028500	Potato	nucleus	54.75	48.88
VIT_18s0072g00220.t01	Wine grape	nucleus	43.85	42.43
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	44.41	42.4
Bra015723.1-P	Field mustard	nucleus	46.93	36.44
CDX87571	Canola	nucleus	46.93	36.44
KRH35109	Soybean	nucleus	48.6	36.25
CDX88310	Canola	nucleus	46.37	36.01
KRG91687	Soybean	nucleus	49.44	35.69
VIT_18s0072g00200.t01	Wine grape	nucleus	49.72	34.56
AT1G76710.3	Thale cress	nucleus	48.88	33.72
Os04t0429100-01	Rice	nucleus	48.32	33.4
TraesCS2A01G302100.1	Wheat	nucleus	46.65	33.27
TraesCS2D01G300800.1	Wheat	nucleus	46.37	33.07
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	46.37	32.94
Zm00001d003679_P006	Maize	nucleus	46.65	32.55
GSMUA_Achr10P...	Banana	nucleus	49.72	32.42
EES10812	Sorghum	nucleus	46.65	32.05
TraesCS2B01G317900.1	Wheat	nucleus	46.65	31.57
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	14.53	27.66
PGSC0003DMT400010951	Potato	cytosol	15.08	23.48
PGSC0003DMT400046777	Potato	nucleus	17.6	9.8
PGSC0003DMT400023342	Potato	nucleus	15.92	6.88
PGSC0003DMT400084490	Potato	nucleus	15.64	6.07
PGSC0003DMT400010235	Potato	nucleus	10.61	4.64
PGSC0003DMT400023546	Potato	nucleus	2.79	1.42

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:IPR001214
InterPro:IPR003616	InterPro:IPR006560	UniProt:M1C3Y1	PFAM:PF00856	EnsemblPlantsGene:PGSC0003DMG400022994	PGSC:PGSC0003DMG400022994
EnsemblPlants:PGSC0003DMT400059198	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PANTHER:PTHR45396	InterPro:Post-SET_dom
InterPro:SET_dom	SMART:SM00317	SMART:SM00570	SUPFAM:SSF82199	UniParc:UPI0002957F45	SEG:seg

Description

Set domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022994]

Coordinates

chr7:+:5764114..5769723

Molecular Weight (calculated)

39901.5 Da

IEP (calculated)

4.872

GRAVY (calculated)

-0.666

Length

358 amino acids

Sequence
(BLAST)

001: MSYRHKKLKE EDVAVCECKY GVNDPETACG ERCLNVLTST ECTLGYCQSG ENCRNQRFQK CEYAKTKLFR TEGRGWGLLA DENIKAGQFI MEYCGEVLSS
101: EAAKKRCLAY EAHKVKDAYI ISVNANYFID ATKKGSLARF INHSCQPNCE TRKWIVLGET RVGIFAKRDI SVGMELSYNY NFEWYGGAPV RCLCGAANCS
201: LFLGSKSQGF KLAQECSHVW EEEDNRYIVD NLPLYGTTND DESSPMISGT SGGNEHSYKG CNQVCEEGDN RYIVDNLPLY DTTNDDESSP VISGTSGGNE
301: HTKILNDGEG STFKVEPTNS TIKKKSQRKP KLKALLQSDV TNIGDDKDED IEEGEATE

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.