CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003679_P006	Maize	nucleus	91.55	92.98
TraesCS2D01G300800.1	Wheat	nucleus	72.36	75.1
TraesCS2A01G302100.1	Wheat	nucleus	72.36	75.1
Os04t0429100-01	Rice	nucleus	73.32	73.75
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	71.21	73.61
TraesCS2B01G317900.1	Wheat	nucleus	71.98	70.89
CDX67669	Canola	cytosol, nucleus, plastid	29.37	59.53
CDX87571	Canola	nucleus	51.63	58.35
Bra015723.1-P	Field mustard	nucleus	51.44	58.13
CDX88310	Canola	nucleus	51.25	57.92
KRH35109	Soybean	nucleus	52.02	56.46
KRG91687	Soybean	nucleus	52.4	55.04
GSMUA_Achr10P...	Banana	nucleus	57.39	54.46
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.16	54.4
VIT_18s0072g00220.t01	Wine grape	nucleus	37.43	52.7
Solyc07g008460.2.1	Tomato	nucleus	45.68	52.65
VIT_18s0072g00200.t01	Wine grape	nucleus	51.82	52.43
AT1G76710.3	Thale cress	nucleus	52.02	52.22
Solyc07g008580.1.1	Tomato	nucleus	27.64	51.8
PGSC0003DMT400059166	Potato	nucleus	29.56	50.66
PGSC0003DMT400028500	Potato	nucleus	38.39	49.88
Solyc09g060000.1.1	Tomato	nucleus	24.76	49.05
PGSC0003DMT400028514	Potato	nucleus	20.92	48.66
PGSC0003DMT400059198	Potato	nucleus	32.05	46.65
PGSC0003DMT400086207	Potato	nucleus	21.69	45.38
Solyc07g008500.1.1	Tomato	nucleus	24.95	45.14
OQU89246	Sorghum	nucleus	17.27	24.13
OQU80550	Sorghum	nucleus	14.4	23.15
KXG30618	Sorghum	nucleus	17.27	15.33
KXG40039	Sorghum	nucleus	12.48	7.23
OQU87254	Sorghum	nucleus	12.09	7.1
KXG31547	Sorghum	cytosol, nucleus, plastid	12.67	6.8
EER89265	Sorghum	plastid	11.9	6.65
OQU85110	Sorghum	nucleus	23.22	6.36
KXG22920	Sorghum	nucleus	12.86	5.9
EER96448	Sorghum	nucleus	11.13	5.69
KXG36166	Sorghum	nucleus, plastid	11.13	3.04

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	EntrezGene:8077608	InterPro:AWS_dom	UniProt:C5YGH0
EnsemblPlants:EES10812	ProteinID:EES10812	ProteinID:EES10812.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:IPR001214	InterPro:IPR003616
InterPro:IPR006560	PFAM:PF00856	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PANTHER:PTHR45396
InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00570	EnsemblPlantsGene:SORBI_3006G080300	SUPFAM:SSF82199
unigene:Sbi.6281	UniParc:UPI0001A86FE5	RefSeq:XP_002446484.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:44885645..44898698

Molecular Weight (calculated)

58414.1 Da

IEP (calculated)

4.625

GRAVY (calculated)

-0.559

Length

521 amino acids

Sequence
(BLAST)

001: MLMEEECVES PSYIHIDRND FSYRKHKRQT EEDIAVCECQ YDILDPESPC GDRCLNLLTN TECTPGYCRC GVYCKNQRFQ KCQYARTRLV RTEGRGWGLV
101: ADENIMAGQF VIEYCGEVIS WKESKRRAQA YETQGLKDAY IIYLNADESI DATRKGNFAR FINHSCQPNC ETRKWNVLGE VRVGIFAKQD IPFGTELSYD
201: YNFEWYGGVM VRCLCGAASC SGFLGAKSRG FQEATYLWED DDDRFSVENI PLYDSADDEP TSVNKDILLS SHGMVAEYNN ISTVQITENP GNAGTNEFAP
301: IIVDELTASS NGLAPKNVEP LTASSNEFTP MTIEPLNAMP MVAHLVENGS TEYSVQDTHD HGVSQNSVPK AANHANQTGS QNNSNHSALV PVKPAPKRRG
401: RKPKRVLPKQ LDIPDICDRL TSSLACEEIL YCEEVKNQAV SEIDALYDEI RPAVEEHERD SQDSVSTSLA EKWIEASCCK YKAEFDLYAA IIKNIASTPL
501: RSKDDVAPRE QNGLKYLENG S

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.