Factsheet for PGSC0003DMT400059166

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008580.1.1	Tomato	nucleus	72.7	79.5
PGSC0003DMT400028514	Potato	nucleus	37.83	51.34
PGSC0003DMT400059198	Potato	nucleus	59.21	50.28
PGSC0003DMT400086207	Potato	nucleus	39.14	47.79
CDX67669	Canola	cytosol, nucleus, plastid	38.16	45.14
PGSC0003DMT400028500	Potato	nucleus	57.89	43.89
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	49.34	40.0
VIT_18s0072g00220.t01	Wine grape	nucleus	48.36	39.73
Bra015723.1-P	Field mustard	nucleus	50.99	33.62
CDX87571	Canola	nucleus	50.99	33.62
CDX88310	Canola	nucleus	50.66	33.41
KRH35109	Soybean	nucleus	51.97	32.92
VIT_18s0072g00200.t01	Wine grape	nucleus	55.26	32.62
KRG91687	Soybean	nucleus	52.63	32.26
AT1G76710.3	Thale cress	nucleus	53.62	31.41
TraesCS2D01G300800.1	Wheat	nucleus	50.0	30.28
TraesCS2A01G302100.1	Wheat	nucleus	50.0	30.28
GSMUA_Achr10P...	Banana	nucleus	54.28	30.05
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	49.67	29.96
Zm00001d003679_P006	Maize	nucleus	50.33	29.82
EES10812	Sorghum	nucleus	50.66	29.56
Os04t0429100-01	Rice	nucleus	49.34	28.96
TraesCS2B01G317900.1	Wheat	nucleus	50.0	28.73
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	17.11	27.66
PGSC0003DMT400010951	Potato	cytosol	16.45	21.74
PGSC0003DMT400046777	Potato	nucleus	21.05	9.95
PGSC0003DMT400023342	Potato	nucleus	19.08	7.0
PGSC0003DMT400084490	Potato	nucleus	19.08	6.29
PGSC0003DMT400010235	Potato	nucleus	13.82	5.13
PGSC0003DMT400023546	Potato	nucleus	4.61	1.99

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.4	Gene3D:2.170.270.10	InterPro:AWS_dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:IPR001214
InterPro:IPR003616	InterPro:IPR006560	UniProt:M1C3W3	PFAM:PF00856	EnsemblPlantsGene:PGSC0003DMG400022981	PGSC:PGSC0003DMG400022981
EnsemblPlants:PGSC0003DMT400059166	PFscan:PS50280	PFscan:PS50868	PFscan:PS51215	PANTHER:PTHR45396	InterPro:Post-SET_dom
InterPro:SET_dom	SMART:SM00317	SMART:SM00570	SUPFAM:SSF82199	UniParc:UPI0002964FD5	SEG:seg

Description

SET domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022981]

Coordinates

chr7:-:5894645..5896770

Molecular Weight (calculated)

35047.0 Da

IEP (calculated)

10.003

GRAVY (calculated)

-0.739

Length

304 amino acids

Sequence
(BLAST)

001: MPFIHITQNV FLRRKHKKLK EDDIAICQCK YDTSDPESAC VERCLNVLTN TECTPGYCQC GDTCKNQIFQ KREYAKTKLF RTNGRGWGLL ADENIKAGQF
101: IIEYCGEVIS SEAAKKRSHV YEAHEVKDTY MISIDTNYVI DSTRKGNFAR FLNHSCRPNC ETRKWTVLGE TRLGIFAMKD ISVGMELTIN YYFEWYAGAT
201: VRCLCGAANC CIFLGAKSQR FKEYNHVWKD GNDRYKVEPS NRSHKNYNIG SGSTTKMKSQ RIPKWKKSRC TPKRKVKSSS RKQVIKGSTR RSHQVRGDKK
301: TKSL

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.