Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g112690.1.1 | Tomato | nucleus | 93.62 | 93.48 |
| PGSC0003DMT400023546 | Potato | nucleus | 38.41 | 35.09 |
| PGSC0003DMT400028514 | Potato | nucleus | 7.47 | 21.43 |
| PGSC0003DMT400028986 | Potato | endoplasmic reticulum, extracellular | 6.22 | 21.28 |
| PGSC0003DMT400059166 | Potato | nucleus | 9.95 | 21.05 |
| PGSC0003DMT400086207 | Potato | nucleus | 7.62 | 19.68 |
| PGSC0003DMT400010951 | Potato | cytosol | 6.53 | 18.26 |
| PGSC0003DMT400059198 | Potato | nucleus | 9.8 | 17.6 |
| PGSC0003DMT400028500 | Potato | nucleus | 9.02 | 14.46 |
| PGSC0003DMT400023342 | Potato | nucleus | 11.82 | 9.17 |
| PGSC0003DMT400084490 | Potato | nucleus | 12.13 | 8.46 |
| PGSC0003DMT400010235 | Potato | nucleus | 8.86 | 6.96 |
Protein Annotations
| KEGG:00310+2.1.1.43 | EntrezGene:102596516 | MapMan:12.3.3.5 | Gene3D:2.170.270.10 | Gene3D:3.30.40.10 | InterPro:EPHD |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008168 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016740 | GO:GO:0018024 | GO:GO:0019538 | GO:GO:0032259 |
| GO:GO:0034968 | GO:GO:0046872 | InterPro:IPR001214 | InterPro:IPR003616 | InterPro:IPR013083 | InterPro:IPR019787 |
| InterPro:IPR034732 | UniProt:M1BJL4 | PFAM:PF00856 | PFAM:PF13831 | PFAM:PF13832 | EnsemblPlantsGene:PGSC0003DMG400018162 |
| PGSC:PGSC0003DMG400018162 | EnsemblPlants:PGSC0003DMT400046777 | ScanProsite:PS01359 | PFscan:PS50016 | PFscan:PS50280 | PFscan:PS50868 |
| PFscan:PS51805 | PANTHER:PTHR13793 | PANTHER:PTHR13793:SF92 | InterPro:Post-SET_dom | InterPro:SET_dom | SMART:SM00249 |
| SMART:SM00317 | SMART:SM00508 | SUPFAM:SSF57903 | SUPFAM:SSF82199 | UniParc:UPI0002949A18 | RefSeq:XP_006344426.1 |
| InterPro:Zinc_finger_PHD-type_CS | InterPro:Znf_FYVE_PHD | InterPro:Znf_PHD | InterPro:Znf_PHD-finger | InterPro:Znf_RING/FYVE/PHD | : |
Description
Trithorax [Source:PGSC_GENE;Acc:PGSC0003DMG400018162]
Coordinates
chr3:+:52481838..52484136
Molecular Weight (calculated)
73461.4 Da
IEP (calculated)
8.569
GRAVY (calculated)
-0.478
Length
643 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVKRKTNKK EIDDEIYREN WFFTSKKQKF DEVFRAGFKD FSFQVKVEES KLPNFLPQVQ DYCFSAESPR SHLHREVKVE LRKINICCSA GKKVCSDLNG
101: NSLCPDCGVK SNFIAVICNG MEGIYFPELH MVECRCGSCR VKKLTVGEWE RHAGSRAKKW KVSIKVMMTM QPLGEWVANN NGHGITPLKI DRRQQLMSLL
201: QEKYNPVNAK WTVERCAICR WIEDWDFNKI IICSRCQIAV HQECYGAREV QDLASWVCRA CETPEVEREC CLCPVKGGAL KPTEVDPFWV HVTCGWFRPE
301: IAFVDYEKME PAIGLLVIPP KSFHQACSIC QQTHGSCIQC SKCTISYHST CASRAGYYME MQCSEKNGTQ TTKWLSYCAS HKAPSEDNIL VMRTSGGVYS
401: NQNLLQRRNG GRVLKGLRLM PSDASSAETN EPDDFSAARC RVFRPSTDKK AKPEPIIHRV TRPHHHSLTA IQSLTSKQHQ EEKNFPTLRE RLHHLSITIN
501: HRVCFGKSGI HGWGLFAKRK LQEGEMVAEY VGEKIRGSVA DLRERKYKSQ GKNCYFFRIN EEVVIDATMK GSIARLINHS CMPNCFSRIM SLGKNEDRIV
601: LFAKKDVSAG NELTFDYRFE PDQNDEVKVP CHCGAPNCSK FMN
101: NSLCPDCGVK SNFIAVICNG MEGIYFPELH MVECRCGSCR VKKLTVGEWE RHAGSRAKKW KVSIKVMMTM QPLGEWVANN NGHGITPLKI DRRQQLMSLL
201: QEKYNPVNAK WTVERCAICR WIEDWDFNKI IICSRCQIAV HQECYGAREV QDLASWVCRA CETPEVEREC CLCPVKGGAL KPTEVDPFWV HVTCGWFRPE
301: IAFVDYEKME PAIGLLVIPP KSFHQACSIC QQTHGSCIQC SKCTISYHST CASRAGYYME MQCSEKNGTQ TTKWLSYCAS HKAPSEDNIL VMRTSGGVYS
401: NQNLLQRRNG GRVLKGLRLM PSDASSAETN EPDDFSAARC RVFRPSTDKK AKPEPIIHRV TRPHHHSLTA IQSLTSKQHQ EEKNFPTLRE RLHHLSITIN
501: HRVCFGKSGI HGWGLFAKRK LQEGEMVAEY VGEKIRGSVA DLRERKYKSQ GKNCYFFRIN EEVVIDATMK GSIARLINHS CMPNCFSRIM SLGKNEDRIV
601: LFAKKDVSAG NELTFDYRFE PDQNDEVKVP CHCGAPNCSK FMN
0001: MIIKRKFKTQ IPSLERCKLG NESRKKKRKL NLGGGGYYYP LNLLGEIAAG IVPGNGRNGF SASWCTEVTK PVEVEESLSK RRSDSGTVRD SPPAEVSRPP
0101: LVRTSRGRIQ VLPSRFNDSV LDNWRKDSKS DCDLEEEEIE CRNEKVVSFR VPKATNLKSK ELDRKSKYSA LCKEERFHEQ HNDEARARVD EKLPNKKGTF
0201: GPENFYSGDL VWAKSGRNEP FWPAIVIDPM TQAPELVLRS CIPDAACVVF FGHSGNENER DYAWVRRGMI FPFVDYVARF QEQPELQGCK PGNFQMALEE
0301: AFLADQGFTE KLMHDIHLAA GNSTFDDSFY RWIQETAVSN QELNNNAPRQ GLLKKHRNPL ACAGCETVIS FEMAKKMKDL IPGDQLLCKP CSRLTKSKHI
0401: CGICKKIRNH LDNKSWVRCD GCKVRIHAEC DQISDRHLKD LRETDYYCPT CRAKFNFDLS DSEKQNSKSK VAKGDGQMVL PDKVIVVCAG VEGVYFPRLH
0501: LVVCKCGSCG PKKKALSEWE RHTGSKSKNW KTSVKVKSSK LALEDWMMNL AELHANATAA KVPKRPSIKQ RKQRLLAFLS ETYEPVNAKW TTERCAVCRW
0601: VEDWDYNKII ICNRCQIAVH QECYGARHVR DFTSWVCKAC ERPDIKRECC LCPVKGGALK PTDVETLWVH VTCAWFQPEV CFASEEKMEP AVGILSIPST
0701: NFVKICVICK QIHGSCTQCC KCSTYYHAMC ASRAGYRMEL HCLEKNGQQI TKMVSYCAYH RAPNPDNVLI IQTPSGAFSA KSLVQNKKKG GSRLISLIRE
0801: DDEAPAENTI TCDPFSAARC RVFKRKINSK KRIEEEAIPH HTRGPRHHAS AAIQTLNTFR HVPEEPKSFS SFRERLHHLQ RTEMDRVCFG RSGIHGWGLF
0901: ARRNIQEGEM VLEYRGEQVR GSIADLREAR YRRVGKDCYL FKISEEVVVD ATDKGNIARL INHSCTPNCY ARIMSVGDEE SRIVLIAKAN VAVGEELTYD
1001: YLFDPDEAEE LKVPCLCKAP NCRKFMN
0101: LVRTSRGRIQ VLPSRFNDSV LDNWRKDSKS DCDLEEEEIE CRNEKVVSFR VPKATNLKSK ELDRKSKYSA LCKEERFHEQ HNDEARARVD EKLPNKKGTF
0201: GPENFYSGDL VWAKSGRNEP FWPAIVIDPM TQAPELVLRS CIPDAACVVF FGHSGNENER DYAWVRRGMI FPFVDYVARF QEQPELQGCK PGNFQMALEE
0301: AFLADQGFTE KLMHDIHLAA GNSTFDDSFY RWIQETAVSN QELNNNAPRQ GLLKKHRNPL ACAGCETVIS FEMAKKMKDL IPGDQLLCKP CSRLTKSKHI
0401: CGICKKIRNH LDNKSWVRCD GCKVRIHAEC DQISDRHLKD LRETDYYCPT CRAKFNFDLS DSEKQNSKSK VAKGDGQMVL PDKVIVVCAG VEGVYFPRLH
0501: LVVCKCGSCG PKKKALSEWE RHTGSKSKNW KTSVKVKSSK LALEDWMMNL AELHANATAA KVPKRPSIKQ RKQRLLAFLS ETYEPVNAKW TTERCAVCRW
0601: VEDWDYNKII ICNRCQIAVH QECYGARHVR DFTSWVCKAC ERPDIKRECC LCPVKGGALK PTDVETLWVH VTCAWFQPEV CFASEEKMEP AVGILSIPST
0701: NFVKICVICK QIHGSCTQCC KCSTYYHAMC ASRAGYRMEL HCLEKNGQQI TKMVSYCAYH RAPNPDNVLI IQTPSGAFSA KSLVQNKKKG GSRLISLIRE
0801: DDEAPAENTI TCDPFSAARC RVFKRKINSK KRIEEEAIPH HTRGPRHHAS AAIQTLNTFR HVPEEPKSFS SFRERLHHLQ RTEMDRVCFG RSGIHGWGLF
0901: ARRNIQEGEM VLEYRGEQVR GSIADLREAR YRRVGKDCYL FKISEEVVVD ATDKGNIARL INHSCTPNCY ARIMSVGDEE SRIVLIAKAN VAVGEELTYD
1001: YLFDPDEAEE LKVPCLCKAP NCRKFMN
Arabidopsis Description
ATX4Histone-lysine N-methyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UVA2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.