Factsheet for PGSC0003DMT400086207

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028514	Potato	nucleus	72.29	80.36
PGSC0003DMT400059198	Potato	nucleus	63.86	44.41
PGSC0003DMT400028500	Potato	nucleus	63.86	39.65
PGSC0003DMT400059166	Potato	nucleus	47.79	39.14
CDX67669	Canola	cytosol, nucleus, plastid	36.14	35.02
Solyc07g008460.2.1	Tomato	nucleus	63.45	34.96
VIT_18s0072g00220.t01	Wine grape	nucleus	39.36	26.49
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	39.76	26.4
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	18.88	25.0
Bra015723.1-P	Field mustard	nucleus	45.78	24.73
CDX87571	Canola	nucleus	45.78	24.73
CDX88310	Canola	nucleus	44.98	24.3
KRH35109	Soybean	nucleus	46.59	24.17
KRG91687	Soybean	nucleus	47.39	23.79
VIT_18s0072g00200.t01	Wine grape	nucleus	48.19	23.3
AT1G76710.3	Thale cress	nucleus	47.79	22.93
TraesCS2A01G302100.1	Wheat	nucleus	44.18	21.91
TraesCS2D01G300800.1	Wheat	nucleus	43.78	21.71
EES10812	Sorghum	nucleus	45.38	21.69
Zm00001d003679_P006	Maize	nucleus	44.58	21.64
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	43.37	21.43
Os04t0429100-01	Rice	nucleus	44.58	21.43
GSMUA_Achr10P...	Banana	nucleus	46.59	21.13
TraesCS2B01G317900.1	Wheat	nucleus	44.18	20.79
PGSC0003DMT400010951	Potato	cytosol	18.88	20.43
PGSC0003DMT400046777	Potato	nucleus	19.68	7.62
PGSC0003DMT400023342	Potato	nucleus	15.66	4.7
PGSC0003DMT400084490	Potato	nucleus	14.86	4.01
PGSC0003DMT400010235	Potato	nucleus	11.24	3.42
PGSC0003DMT400023546	Potato	nucleus	1.61	0.57

Protein Annotations

EnsemblPlants:PGSC0003DMT400086207	EnsemblPlantsGene:PGSC0003DMG400035778	Gene3D:2.170.270.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001214	InterPro:SET_dom	PANTHER:PTHR45396	PFAM:PF00856	PFscan:PS50280	PGSC:PGSC0003DMG400035778
SMART:SM00317	SUPFAM:SSF82199	UniParc:UPI0002959C8D	UniProt:M1DB87	MapMan:35.1	:

Description

Set domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400035778]

Coordinates

chr9:+:38858675..38860722

Molecular Weight (calculated)

27858.3 Da

IEP (calculated)

4.629

GRAVY (calculated)

-0.440

Length

249 amino acids

Sequence
(BLAST)

001: MQKLSCSGWG LLADENIKAG QFIIECCGEV ISFDEVKKGS QAYESHDLKD VYIISMDGND FIDSTWKGSF ARFINHSCNP NCEISKWIVS GETRVGIFVK
101: QDISVGMELT YEYNFEWYGG ANVHCLCGVA NCSLILGAKS RRFREYSHVW EDGDDRYIVD DLPVYDSTDD ESTPVISGTS GGNEHTKILN DGEGSTFKLE
201: PTNSATKKKS QRNQEEVSAQ PQVEGQISHS YFYSLYSHVT IQFRTTIGA

Best Arabidopsis Sequence Match ( AT1G76710.3 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EVKQFFKRIG TNSKPSQYQM CLVNCCLQEV KKEAAVRLSS LYDEIRPAIE EHERDSQDSV ATSVAEKWIQ ASCNKLKAEF DLYSSVIKNI ASTPIKPQDT
501: KTKVAEAGNE DHIKLLEAK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.