CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015723.1-P	Field mustard	nucleus	82.49	45.99
CDX87571	Canola	nucleus	82.49	45.99
CDX88310	Canola	nucleus	82.1	45.77
PGSC0003DMT400028514	Potato	nucleus	35.02	40.18
Solyc07g008580.1.1	Tomato	nucleus	43.19	39.93
AT1G76710.3	Thale cress	nucleus	80.16	39.69
PGSC0003DMT400059166	Potato	nucleus	45.14	38.16
Solyc09g060000.1.1	Tomato	nucleus	37.74	36.88
PGSC0003DMT400059198	Potato	nucleus	50.97	36.59
PGSC0003DMT400086207	Potato	nucleus	35.02	36.14
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	51.36	35.2
VIT_18s0072g00220.t01	Wine grape	nucleus	50.58	35.14
Solyc07g008500.1.1	Tomato	nucleus	37.35	33.33
KRH35109	Soybean	nucleus	61.48	32.92
KRG91687	Soybean	nucleus	63.03	32.66
VIT_18s0072g00200.t01	Wine grape	nucleus	62.65	31.26
Solyc07g008460.2.1	Tomato	nucleus	54.86	31.19
TraesCS2D01G300800.1	Wheat	nucleus	59.92	30.68
TraesCS2A01G302100.1	Wheat	nucleus	59.92	30.68
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	59.14	30.16
Os04t0429100-01	Rice	nucleus	60.7	30.12
Zm00001d003679_P006	Maize	nucleus	59.92	30.02
EES10812	Sorghum	nucleus	59.53	29.37
GSMUA_Achr10P...	Banana	nucleus	61.87	28.96
TraesCS2B01G317900.1	Wheat	nucleus	59.53	28.92
PGSC0003DMT400028500	Potato	nucleus	43.97	28.18
CDX98400	Canola	nucleus	24.12	19.31
CDX67818	Canola	nucleus	24.12	19.31
CDY41194	Canola	nucleus	25.68	19.02
CDX71856	Canola	nucleus	25.68	18.33
CDX79778	Canola	cytosol	25.29	17.81
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.07	17.77
CDX95590	Canola	nucleus	24.9	17.53
CDX83438	Canola	cytosol	24.9	17.34
CDY23260	Canola	nucleus	23.74	12.35
CDY36467	Canola	nucleus	23.74	12.32
CDY15252	Canola	nucleus	18.29	10.61
CDX95185	Canola	endoplasmic reticulum, nucleus	19.84	10.43
CDX89960	Canola	nucleus	18.29	7.37
CDY32472	Canola	nucleus	18.29	7.31
CDY37467	Canola	nucleus	18.29	7.08
CDY22021	Canola	nucleus	19.46	5.87
CDY29869	Canola	mitochondrion	21.79	5.85
CDY07102	Canola	nucleus	19.46	5.84
CDX92851	Canola	mitochondrion	20.62	5.79
CDX67860	Canola	nucleus	21.01	5.6
CDY25072	Canola	nucleus	21.01	5.53
CDY38942	Canola	nucleus, plastid	19.07	5.4
CDX89569	Canola	nucleus, plastid	19.07	5.38
CDY35655	Canola	nucleus	20.23	5.34
CDY14381	Canola	nucleus	20.23	5.34
CDX88357	Canola	nucleus	31.91	4.95
CDX87527	Canola	nucleus	31.91	4.95
CDY19078	Canola	nucleus	19.46	4.85
CDY15398	Canola	nucleus	19.46	4.84
CDY06182	Canola	nucleus	18.29	4.43
CDY10007	Canola	nucleus	17.9	4.13
CDY17381	Canola	nucleus	13.23	4.04
CDY52297	Canola	nucleus	20.23	4.04
CDX95184	Canola	cytosol	3.89	0.89

Protein Annotations

KEGG:00310+2.1.1.43	Gene3D:2.170.270.10	MapMan:35.1	GO:A0A078BVE5	InterPro:AWS_dom	EnsemblPlants:CDX67669
ProteinID:CDX67669	ProteinID:CDX67669.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00098840001	InterPro:IPR001214	InterPro:IPR003616	InterPro:IPR006560	PFAM:PF00856	PFscan:PS50280
PFscan:PS50868	PFscan:PS51215	PANTHER:PTHR45396	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00508	SMART:SM00570	SUPFAM:SSF82199	UniParc:UPI0004EF3FCC	:	:

Description

BnaA07g17090D

Coordinates

chrLK031787:-:1641679..1645767

Molecular Weight (calculated)

28743.6 Da

IEP (calculated)

4.823

GRAVY (calculated)

-0.434

Length

257 amino acids

Sequence
(BLAST)

001: MEISCSSPQS KEEDISICEC KFDFGDPDSA CGERCLNVIT NTECTPGYCP CGVYCKNQVN TVFECLLLCA YVKSGTCGCT VICRIELVWA YNSVAYYKEA
101: KRRAQTYETH GVKDAYIISL NASEAIDVTK KGSLARFINH SCKPNCETRK WNVLGEVRVG IFAKESISPR TELAYDYNFE WYGGTKVRCL CGAVSCSGFL
201: GAKSRGFQED TYVWEDGDDR YSVDKIPVYD SAEDELTSEP TSKNVESNKN KYNNQTT

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.