CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX75032
CDX84179
CDX84180
CDX88663
CDX89960
CDY02805
CDY15252
CDY27567
CDY31712
CDY32472
CDY32715
CDY33160
CDY37467
CDY43875
CDY53612
CDY58569
CDY62688

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02580.1	CDX89960	AT1G02580.1	10962025
AT1G02580.1	CDY15252	AT1G02580.1	10962025
AT1G02580.1	CDY32472	AT1G02580.1	10962025
AT1G02580.1	CDY37467	AT1G02580.1	10962025
AT1G02580.1	CDX89960	AT1G02580.1	11148284
AT1G02580.1	CDY15252	AT1G02580.1	11148284
AT1G02580.1	CDY32472	AT1G02580.1	11148284
AT1G02580.1	CDY37467	AT1G02580.1	11148284
AT1G02580.1	CDX75032	AT2G35670.1	15456723
AT1G02580.1	CDX84179	AT2G35670.1	15456723
AT1G02580.1	CDX84180	AT2G35670.1	15456723
AT1G02580.1	CDY31712	AT2G35670.1	15456723
AT1G02580.1	CDY33160	AT2G35670.1	15456723
AT1G02580.1	CDX75032	AT2G35670.1	16924116
AT1G02580.1	CDX84179	AT2G35670.1	16924116
AT1G02580.1	CDX84180	AT2G35670.1	16924116
AT1G02580.1	CDY31712	AT2G35670.1	16924116
AT1G02580.1	CDY33160	AT2G35670.1	16924116
AT1G02580.1	CDY27567	AT3G20740.1	10962025
AT1G02580.1	CDY53612	AT3G20740.1	10962025
AT1G02580.1	CDY27567	AT3G20740.1	11114524
AT1G02580.1	CDY53612	AT3G20740.1	11114524
AT1G02580.1	CDY27567	AT3G20740.1	11148284
AT1G02580.1	CDY53612	AT3G20740.1	11148284
AT1G02580.1	CDY27567	AT3G20740.1	15456723
AT1G02580.1	CDY53612	AT3G20740.1	15456723
AT1G02580.1	CDY27567	AT3G20740.1	15469499
AT1G02580.1	CDY53612	AT3G20740.1	15469499
AT1G02580.1	CDY27567	AT3G20740.1	18812497
AT1G02580.1	CDY53612	AT3G20740.1	18812497
AT1G02580.1	CDX88663	AT5G58230.1	12970192
AT1G02580.1	CDY02805	AT5G58230.1	12970192
AT1G02580.1	CDY32715	AT5G58230.1	12970192
AT1G02580.1	CDY43875	AT5G58230.1	12970192
AT1G02580.1	CDY58569	AT5G58230.1	12970192
AT1G02580.1	CDY62688	AT5G58230.1	12970192

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32472	Canola	nucleus	93.07	96.11
CDY15252	Canola	nucleus	46.54	69.75
CDX89960	Canola	nucleus	61.9	64.42
AT1G02580.1	Thale cress	nucleus	58.73	56.6
KRG96530	Soybean	cytosol, nucleus	34.64	33.92
KRH28654	Soybean	nucleus	34.79	33.0
KRH68267	Soybean	nucleus	35.69	31.85
CDY22021	Canola	nucleus	40.81	31.81
CDY07102	Canola	nucleus	40.51	31.43
CDY17381	Canola	nucleus	38.25	30.2
KRH69214	Soybean	nucleus	38.7	29.61
KRH68336	Soybean	nucleus	35.84	29.24
KRH31789	Soybean	nucleus	38.25	29.2
GSMUA_Achr1P24850_001	Banana	nucleus	37.5	28.26
KXG40039	Sorghum	nucleus	36.45	26.92
Os03t0307800-01	Rice	nucleus	35.84	26.59
TraesCS4D01G184600.3	Wheat	nucleus, plastid	35.54	26.52
TraesCS4B01G181400.3	Wheat	nucleus, plastid	35.54	26.52
HORVU4Hr1G053740.8	Barley	cytosol, mitochondrion, nucleus	35.84	26.1
CDX89569	Canola	nucleus, plastid	35.39	25.82
CDY38942	Canola	nucleus, plastid	35.09	25.69
Zm00001d047636_P002	Maize	nucleus	33.28	24.89
TraesCS4A01G121300.4	Wheat	mitochondrion	35.39	24.28
Zm00001d028890_P002	Maize	nucleus	33.73	20.16
CDX67669	Canola	cytosol, nucleus, plastid	7.08	18.29
CDX98400	Canola	nucleus	7.83	16.2
CDX67818	Canola	nucleus	7.68	15.89
CDY41194	Canola	nucleus	7.98	15.27
CDY17880	Canola	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	8.28	14.59
CDX79778	Canola	cytosol	7.98	14.52
CDX71856	Canola	nucleus	7.83	14.44
CDY36467	Canola	nucleus	10.54	14.14
CDX95590	Canola	nucleus	7.68	13.97
CDX83438	Canola	cytosol	7.68	13.82
CDY23260	Canola	nucleus	10.09	13.56
CDX87571	Canola	nucleus	8.58	12.36
CDX88310	Canola	nucleus	8.58	12.36
CDX95185	Canola	endoplasmic reticulum, nucleus	8.89	12.07
CDY29869	Canola	mitochondrion	13.1	9.09
CDX92851	Canola	mitochondrion	11.9	8.62
CDX67860	Canola	nucleus	11.9	8.2
CDY35655	Canola	nucleus	11.6	7.91
CDY14381	Canola	nucleus	11.6	7.91
CDY25072	Canola	nucleus	11.45	7.78
CDY06182	Canola	nucleus	11.6	7.25
CDY19078	Canola	nucleus	11.14	7.18
CDY15398	Canola	nucleus	10.99	7.06
CDY10007	Canola	nucleus	10.99	6.56
CDY52297	Canola	nucleus	11.9	6.13
CDX87527	Canola	nucleus	12.35	4.95
CDX88357	Canola	nucleus	12.2	4.89
CDX95184	Canola	cytosol	5.72	3.37

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.1.1.4	MapMan:12.3.3.3	Gene3D:2.170.270.10	UniProt:A0A078HHY6	EnsemblPlants:CDY37467
ProteinID:CDY37467	ProteinID:CDY37467.1	InterPro:CXC_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0031519	EnsemblPlantsGene:GSBRNA2T00064051001
InterPro:Hist-Lys_N-MeTrfase_EZ	InterPro:IPR001214	InterPro:IPR025778	InterPro:IPR026489	PFAM:PF00856	PFscan:PS50280
PFscan:PS51633	PANTHER:PTHR22884	PANTHER:PTHR22884:SF237	InterPro:SET_dom	SMART:SM00317	SMART:SM01114
SUPFAM:SSF82199	InterPro:Tesmin/TSO1-like_CXC	UniParc:UPI0004EE3DBA	SEG:seg	:	:

Description

BnaC08g46050DBnaC08g46050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHY6]

Coordinates

chrLK032400:-:240536..244755

Molecular Weight (calculated)

76149.9 Da

IEP (calculated)

7.086

GRAVY (calculated)

-0.757

Length

664 amino acids

Sequence
(BLAST)

001: MLFRGFVQES HEGENLPPEL NQIKEQIERE RFLHIQKSFA DRPNVVTHVA YHHSLASTRG AGVNNDGGDN NMLSLRIKKP LHVFKYNPPE EFTSPIPKKQ
101: VIKLPIVKQL PRAITWVFTD SNKLMAESDS VIGKKQIIYV NGQAEELSSD DEEDEEETEK EKLEFSKDAD WFIWLVGQKH NLDDLVVQSA LSKFFELDVS
201: DILERYNDLK KLKINEGDTG EVSDVRIFTS SPETTERRFC RRCLRFDCRV HEEYQPEIYT KENQSNLFEK EDVRKQCSNH CYLKLKGVTE ADHMVDNDNY
301: VSNKKGKNVV SEMSQAYNEW TSVEMDLYLK GAKLFGRNSC LITRNVLPGL KTCLEVYNYM HEQDQCKMLL EHEETSETDN QVNKETSRKK PRLVRKKVKH
401: QKHICYPAAI KNTMNEIEKS YKQYTPCSCE PVCGDQCPCF RNGNCCEIYC GCPKTCNNRF GGCNCTKGQC INRKCPCFSN FRECNPDQCR SCSLSCGDGH
501: GSLGETSKTS ECKNMQFLLK KHKKILLGMS NVHGWGAFTR HSLKQNEFLG EYTGELVSVD EAEERERADH KLGYSYLFNL NDKFVIDSRR QGNKFRFLNH
601: SSNPNCCAKL MIVKGDQRIG LFAGKAIREG EELFFEYKPG EVDRSPSISS DSGSSKSENS SSST

Best Arabidopsis Sequence Match ( AT1G02580.1 )
(BLAST)

001: MEKENHEDDG EGLPPELNQI KEQIEKERFL HIKRKFELRY IPSVATHASH HQSFDLNQPA AEDDNGGDNK SLLSRMQNPL RHFSASSDYN SYEDQGYVLD
101: EDQDYALEED VPLFLDEDVP LLPSVKLPIV EKLPRSITWV FTKSSQLMAE SDSVIGKRQI YYLNGEALEL SSEEDEEDEE EDEEEIKKEK CEFSEDVDRF
201: IWTVGQDYGL DDLVVRRALA KYLEVDVSDI LERYNELKLK NDGTAGEASD LTSKTITTAF QDFADRRHCR RCMIFDCHMH EKYEPESRSS EDKSSLFEDE
301: DRQPCSEHCY LKVRSVTEAD HVMDNDNSIS NKIVVSDPNN TMWTPVEKDL YLKGIEIFGR NSCDVALNIL RGLKTCLEIY NYMREQDQCT MSLDLNKTTQ
401: RHNQVTKKVS RKSSRSVRKK SRLRKYARYP PALKKTTSGE AKFYKHYTPC TCKSKCGQQC PCLTHENCCE KYCGCSKDCN NRFGGCNCAI GQCTNRQCPC
501: FAANRECDPD LCRSCPLSCG DGTLGETPVQ IQCKNMQFLL QTNKKILIGK SDVHGWGAFT WDSLKKNEYL GEYTGELITH DEANERGRIE DRIGSSYLFT
601: LNDQLEIDAR RKGNEFKFLN HSARPNCYAK LMIVRGDQRI GLFAERAIEE GEELFFDYCY GPEHADWSRG REPRKTGASK RSKEARPAR

Arabidopsis Description

MEAHistone-lysine N-methyltransferase MEDEA [Source:UniProtKB/Swiss-Prot;Acc:O65312]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.