CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89569
CDX89960
CDY07102
CDY15252
CDY17381
CDY22021
CDY32472
CDY37467
CDY38942

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	CDX89960	AT1G02580.1	15456723
AT2G35670.1	CDY15252	AT1G02580.1	15456723
AT2G35670.1	CDY32472	AT1G02580.1	15456723
AT2G35670.1	CDY37467	AT1G02580.1	15456723
AT2G35670.1	CDX89960	AT1G02580.1	16924116
AT2G35670.1	CDY15252	AT1G02580.1	16924116
AT2G35670.1	CDY32472	AT1G02580.1	16924116
AT2G35670.1	CDY37467	AT1G02580.1	16924116
AT2G35670.1	CDX89569	AT2G23380.1	15456723
AT2G35670.1	CDY38942	AT2G23380.1	15456723
AT2G35670.1	CDX89569	AT2G23380.1	16924116
AT2G35670.1	CDY38942	AT2G23380.1	16924116
AT2G35670.1	CDY07102	AT4G02020.1	15456723
AT2G35670.1	CDY17381	AT4G02020.1	15456723
AT2G35670.1	CDY22021	AT4G02020.1	15456723
AT2G35670.1	CDY07102	AT4G02020.1	16924116
AT2G35670.1	CDY17381	AT4G02020.1	16924116
AT2G35670.1	CDY22021	AT4G02020.1	16924116

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005262.1-P	Field mustard	mitochondrion	99.21	99.21
CDY31712	Canola	nucleus	62.83	68.77
CDX84179	Canola	cytosol	71.73	67.16
CDY33160	Canola	nucleus	78.53	65.22
CDX84180	Canola	cytosol	22.25	38.81
GSMUA_Achr2P11140_001	Banana	cytosol	8.9	30.63
TraesCSU01G224600.1	Wheat	nucleus	8.64	26.61
TraesCSU01G194400.1	Wheat	nucleus	8.64	26.61
CDY71414	Canola	nucleus	27.49	26.12
CDX76587	Canola	nucleus	28.27	25.53
CDY42943	Canola	nucleus	27.23	22.37
CDY43476	Canola	nucleus	8.38	21.48
CDY35632	Canola	cytosol	25.39	21.46
KRH28171	Soybean	nucleus	21.73	19.53
KRH77315	Soybean	nucleus	21.73	19.39
CDY00458	Canola	cytosol	14.14	15.7
KXG37542	Sorghum	nucleus	20.42	12.98
Zm00001d034036_P003	Maize	golgi	20.16	12.64
Os09t0306800-01	Rice	cytosol, nucleus	19.63	12.38
TraesCS2B01G023900.1	Wheat	cytosol	19.37	12.33
TraesCS2D01G000600.1	Wheat	cytosol	19.37	12.27
TraesCS2A01G000100.1	Wheat	nucleus	19.37	12.25
AT2G35670.1	Thale cress	nucleus	24.08	12.19
CDX99960	Canola	nucleus	20.16	12.18
CDY00460	Canola	nucleus, plastid	20.16	12.18
Os04t0162100-01	Rice	nucleus	19.9	12.18
HORVU2Hr1G000010.32	Barley	nucleus	19.11	12.05
OQU89244	Sorghum	nucleus	19.63	11.96
HORVU5Hr1G054730.1	Barley	nucleus	19.9	11.93
TraesCS5D01G184200.2	Wheat	nucleus	19.63	11.76
TraesCS5A01G179600.1	Wheat	nucleus	19.63	11.76
KXG25810	Sorghum	nucleus	18.32	11.55
TraesCS5B01G177400.2	Wheat	nucleus	19.63	11.42
CDY16330	Canola	nucleus	18.85	11.39
CDX91573	Canola	nucleus	18.32	11.11
Zm00001d020036_P002	Maize	nucleus	19.63	10.95
HORVU2Hr1G000390.20	Barley	nucleus	18.85	10.89
TraesCS2B01G020400.3	Wheat	nucleus	18.06	10.75
TraesCS2A01G002500.1	Wheat	nucleus	18.06	10.65
TraesCS4D01G183300.1	Wheat	nucleus	2.88	8.59
TraesCS5D01G388900.1	Wheat	nucleus	2.88	8.59
CDY38857	Canola	nucleus	12.57	6.45
TraesCS3B01G073800.1	Wheat	nucleus	0.52	0.78

Protein Annotations

EnsemblPlants:CDX75032	EnsemblPlantsGene:GSBRNA2T00117060001	InterPro:Polycomb_protein_VEFS-Box	ncoils:Coil	PANTHER:PTHR22597	PANTHER:PTHR22597:SF8
PFAM:PF09733	ProteinID:CDX75032	ProteinID:CDX75032.1	SEG:seg	UniParc:UPI0004EE014E	MapMan:12.3.3.1.1.3
MapMan:15.5.15	:	:	:	:	:

Description

BnaA05g07780D

Coordinates

chrLK031802:+:2068741..2070845

Molecular Weight (calculated)

43711.1 Da

IEP (calculated)

8.963

GRAVY (calculated)

-0.699

Length

382 amino acids

Sequence
(BLAST)

001: MNCNNIILRS QVVKRTSCPF CRMKCGSLKG VKHHLTSSHA LFDFNFRLSE NGHPMFDVSV KPDAFKNGVQ NDDLEEHNRV NTYFYRSKSR MRGQRGVPKG
101: RKCCKIFEKY SEDVPRDKAN EIPHVNGDNI PSSLARTRLS GQTSDIQTVT QLEIGQSSKA KRPRATGRKR LNPRRLEAER TDLLRSRQFY HSKTLQPMTL
201: EEVLSAADSD NENDKEFKDF QERMKIDRLV DASDDEKRFM VLWNTFMDDQ SVYADKHVPW ACEQFVKHHA KELITPELSW QWRMFAIDTL CIKYGLISPK
301: TMDKCSIILQ KAQLEEEFPE EAAAAAEMEA LEEAEAAAEA AAKAAAKASA AKGTRKSARI QKKKMQEAER ALAMVCVRDL HF

Best Arabidopsis Sequence Match ( AT2G35670.1 )
(BLAST)

001: MARKSIRGKE VVMVSDDDDD DDDDVDDDKN IIKCVKPLTV YKNLETPTDS DDNDDDDDDD VDVDENIIKY IKPVAVYKKL ETRSKNNPYF LRRSLKYIIQ
101: AKKKKKSNSG GKIRFNYRDV SNKMTLKAEV VENFSCPFCL IPCGGHEGLQ LHLKSSHDAF KFEFYRAEKD HGPEVDVSVK SDTIKFGVLK DDVGNPQLSP
201: LTFCSKNRNQ RRQRDDSNNV KKLNVLLMEL DLDDLPRGTE NDSTHVNDDN VSSPPRAHSS EKISDILTTT QLAIAESSEP KVPHVNDGNV SSPPRAHSSA
301: EKNESTHVND DDDVSSPPRA HSLEKNESTH VNEDNISSPP KAHSSKKNES THMNDEDVSF PPRTRSSKET SDILTTTQPA IVEPSEPKVR RVSRRKQLYA
401: KRYKARETQP AIAESSEPKV LHVNDENVSS PPEAHSLEKA SDILTTTQPA IAESSEPKVP HVNDENVSST PRAHSSKKNK STRKNVDNVP SPPKTRSSKK
501: TSDILTTTQP TIAESSEPKV RHVNDDNVSS TPRAHSSKKN KSTRKNDDNI PSPPKTRSSK KTSNILATTQ PAKAEPSEPK VTRVSRRKEL HAERCEAKRL
601: ERLKGRQFYH SQTMQPITFE QVMSNEDSEN ETDDYALDIS ERLRLERLVG VSKEEKRYMY LWNIFVRKQR VIADGHVPWA CEEFAKLHKE EMKNSSSFDW
701: WWRMFRIKLW NNGLICAKTF HKCTTILLSN SDEAGQFTSG SAANANNQQS MEVDE

Arabidopsis Description

FIS2Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2 [Source:UniProtKB/Swiss-Prot;Acc:P0DKJ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.