CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87993
EER89265
EER99683
EES13318
KXG40039
OQU79846
OQU91278

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	KXG40039	AT1G02580.1	15456723
AT2G35670.1	KXG40039	AT1G02580.1	16924116
AT2G35670.1	EER89265	AT2G23380.1	15456723
AT2G35670.1	EER89265	AT2G23380.1	16924116
AT2G35670.1	KXG40039	AT4G02020.1	15456723
AT2G35670.1	KXG40039	AT4G02020.1	16924116
AT4G16845.1	EER89265	AT2G23380.1	15456723
AT4G16845.1	KXG40039	AT4G02020.1	15456723
AT5G51230.1	EER87993	AT1G30530.1	23778966
AT5G51230.1	EER99683	AT1G30530.1	23778966
AT5G51230.1	EER89265	AT2G23380.1	15456723
AT5G51230.1	EES13318	AT3G20740.1	23778966
AT5G51230.1	OQU79846	AT3G20740.1	23778966
AT5G51230.1	KXG40039	AT4G02020.1	15456723
AT5G51230.1	KXG40039	AT4G02020.1	23778966
AT5G51230.1	OQU91278	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1675g00010.t01	Wine grape	cytosol	12.87	62.9
KXG37542	Sorghum	nucleus	53.8	54.24
OQU89244	Sorghum	nucleus	54.13	52.31
Os04t0162100-01	Rice	nucleus	50.33	48.88
HORVU2Hr1G000390.20	Barley	nucleus	48.35	44.33
TraesCS2B01G020400.3	Wheat	nucleus	46.7	44.08
TraesCS2A01G002500.1	Wheat	nucleus	46.53	43.52
VIT_16s0013g00860.t01	Wine grape	nucleus	44.55	40.79
VIT_02s0234g00050.t01	Wine grape	nucleus	25.08	40.32
Solyc03g093640.2.1	Tomato	nucleus	41.75	39.66
GSMUA_Achr4P29640_001	Banana	nucleus	42.9	39.27
CDX91573	Canola	nucleus	39.93	38.41
Bra022541.1-P	Field mustard	nucleus	39.93	38.29
CDY16330	Canola	nucleus	39.93	38.29
KRH28171	Soybean	nucleus	26.73	38.12
KRH77315	Soybean	nucleus	26.73	37.85
AT5G51230.1	Thale cress	nucleus	38.78	37.24
GSMUA_Achr2P11170_001	Banana	nucleus	42.24	37.1
CDX99960	Canola	nucleus	38.45	36.87
CDY00460	Canola	nucleus, plastid	38.45	36.87
Bra015200.1-P	Field mustard	nucleus, plastid	38.45	36.87
KRH33365	Soybean	nucleus	35.64	35.53
KRG90126	Soybean	nucleus	35.48	35.36
CDY00458	Canola	cytosol	18.98	33.43
Bra015201.1-P	Field mustard	cytosol	18.98	33.43
CDY43476	Canola	nucleus	8.09	32.89
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	12.21	31.9
CDY71414	Canola	nucleus	19.47	29.35
AT4G16845.1	Thale cress	nucleus	20.3	27.95
CDX76587	Canola	nucleus	19.31	27.66
Bra021078.1-P	Field mustard	nucleus	19.14	27.29
CDX84180	Canola	cytosol	7.76	21.46
Bra005316.1-P	Field mustard	nucleus	8.25	21.1
CDY42943	Canola	nucleus	16.17	21.08
Bra040097.1-P	Field mustard	nucleus	16.17	21.08
CDY35632	Canola	cytosol	15.35	20.58
CDY33160	Canola	nucleus	14.69	19.35
KRH34601	Soybean	nucleus	24.26	18.75
CDY31712	Canola	nucleus	10.73	18.62
CDX75032	Canola	mitochondrion, nucleus	11.55	18.32
Bra005262.1-P	Field mustard	mitochondrion	11.55	18.32
Bra029179.1-P	Field mustard	nucleus	23.1	16.2
CDX84179	Canola	cytosol	10.89	16.18
CDY38857	Canola	nucleus	19.47	15.86
AT4G16810.1	Thale cress	nucleus	7.59	15.33
AT2G35670.1	Thale cress	nucleus	15.02	12.05

Protein Annotations

EnsemblPlants:KXG25810	EnsemblPlantsGene:SORBI_3006G015500	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0	PFAM:PF09733
ProteinID:KXG25810	ProteinID:KXG25810.1	SEG:seg	UniParc:UPI00081AB70F	UniProt:A0A1B6PJF5	MapMan:12.3.3.1.1.3
MapMan:15.5.15	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:2371217..2406434

Molecular Weight (calculated)

69088.1 Da

IEP (calculated)

7.692

GRAVY (calculated)

-0.390

Length

606 amino acids

Sequence
(BLAST)

001: MSCQTLPNDV AMNTGCIYGS SSSLDQIYRL LSREGLSSDF AENSRVLFGN HTLLCELIKK RAKEKPSFLQ RDLRYKIQAK QNKRIQITIS LSGSSNTVQA
101: QNIFPLYALI AKPVSTILYK GHSPVYQFTR ACLLTCFDES GRNSHTEATF IIEDLKTLAN IILVSCGKFG QSPDENNCSK NQLENSSLRK LGGQCFWGKI
201: PNDLLHSSLE NCVDLSLGRT KKFALPVTMS PGFGETKYLE QDSFLTFCSL KFNSVCPYQL EVSIRAQTTG ARYMFKSPYN SYLYNDVPPS FLPHIVSLRN
301: GNVCFKYGND IFDATEVTEG FCCSFCYEKC GSFLGLQWHL MSSHDRFNFE FWISEKEQGV NVTLKHNTWS DEDFPAGIDP RQRTFSYFSK YKKRRRLVTA
401: TEVVVPSKGS KSPEDAYASF EDSYVLKEID TSVDPACSLH DGHLSPPRVI QFGKTRKLSV DQFDPKLRQV LRTRQFFHSH KGQQMTVEEV LSNHDSEDEV
501: DDDVADFEDR KMLDSFDDIA IDEKRVMHMW NSFVPRQRVI ADCHIPYACK AFSQLHGQLL AQSPSLLWCW RLFMIKLWNH NLLNGKTMDA CNLIIDGFKN
601: KGSDPK

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.