CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96530
KRH28444
KRH28654
KRH31789
KRH68267
KRH68336
KRH69214
KRH77020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	KRG96530	AT1G02580.1	15456723
AT2G35670.1	KRH28654	AT1G02580.1	15456723
AT2G35670.1	KRH31789	AT1G02580.1	15456723
AT2G35670.1	KRH68267	AT1G02580.1	15456723
AT2G35670.1	KRH68336	AT1G02580.1	15456723
AT2G35670.1	KRH69214	AT1G02580.1	15456723
AT2G35670.1	KRG96530	AT1G02580.1	16924116
AT2G35670.1	KRH28654	AT1G02580.1	16924116
AT2G35670.1	KRH31789	AT1G02580.1	16924116
AT2G35670.1	KRH68267	AT1G02580.1	16924116
AT2G35670.1	KRH68336	AT1G02580.1	16924116
AT2G35670.1	KRH69214	AT1G02580.1	16924116
AT2G35670.1	KRH28444	AT2G23380.1	15456723
AT2G35670.1	KRH77020	AT2G23380.1	15456723
AT2G35670.1	KRH28444	AT2G23380.1	16924116
AT2G35670.1	KRH77020	AT2G23380.1	16924116
AT4G16845.1	KRH28444	AT2G23380.1	15456723
AT4G16845.1	KRH77020	AT2G23380.1	15456723

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77315	Soybean	nucleus	95.06	94.39
TraesCSU01G224600.1	Wheat	nucleus	20.71	70.97
TraesCSU01G194400.1	Wheat	nucleus	20.71	70.97
GSMUA_Achr2P11140_001	Banana	cytosol	16.71	63.96
CDY43476	Canola	nucleus	20.47	58.39
CDY71414	Canola	nucleus	41.41	43.78
CDX76587	Canola	nucleus	41.18	41.37
Bra021078.1-P	Field mustard	nucleus	40.94	40.94
AT4G16845.1	Thale cress	nucleus	41.41	40.0
KRH33365	Soybean	nucleus	51.53	36.02
Os09t0306800-01	Rice	cytosol, nucleus	50.59	35.48
KXG37542	Sorghum	nucleus	50.12	35.44
TraesCS4D01G183300.1	Wheat	nucleus	10.59	35.16
KRG90126	Soybean	nucleus	50.12	35.03
TraesCS2D01G000600.1	Wheat	cytosol	49.18	34.66
TraesCS2A01G000100.1	Wheat	nucleus	49.18	34.6
TraesCS2B01G023900.1	Wheat	cytosol	48.47	34.33
OQU89244	Sorghum	nucleus	49.88	33.81
HORVU2Hr1G000010.32	Barley	nucleus	47.76	33.5
HORVU5Hr1G054730.1	Barley	nucleus	50.12	33.44
TraesCS5A01G179600.1	Wheat	nucleus	49.41	32.92
TraesCS5D01G184200.2	Wheat	nucleus	49.41	32.92
Zm00001d034036_P003	Maize	golgi	47.06	32.84
TraesCS5D01G388900.1	Wheat	nucleus	9.88	32.81
TraesCS5B01G177400.2	Wheat	nucleus	49.65	32.12
Zm00001d020036_P002	Maize	nucleus	49.88	30.95
Os04t0162100-01	Rice	nucleus	45.18	30.77
CDX84180	Canola	cytosol	14.59	28.31
TraesCS2B01G020400.3	Wheat	nucleus	41.88	27.73
TraesCS2A01G002500.1	Wheat	nucleus	42.12	27.62
Bra005316.1-P	Field mustard	nucleus	15.06	27.0
HORVU2Hr1G000390.20	Barley	nucleus	41.88	26.93
KXG25810	Sorghum	nucleus	38.12	26.73
Bra040097.1-P	Field mustard	nucleus	26.59	24.3
CDY42943	Canola	nucleus	26.59	24.3
CDY35632	Canola	cytosol	25.18	23.67
CDY33160	Canola	nucleus	24.71	22.83
CDY31712	Canola	nucleus	18.59	22.64
CDX75032	Canola	mitochondrion, nucleus	19.53	21.73
Bra005262.1-P	Field mustard	mitochondrion	19.29	21.47
CDX84179	Canola	cytosol	18.59	19.36
KRH34601	Soybean	nucleus	30.12	16.33
TraesCS3B01G073800.1	Wheat	nucleus	8.0	13.28
AT2G35670.1	Thale cress	nucleus	20.47	11.52

Protein Annotations

EMBL:ACUP02006741	EnsemblPlants:KRH28171	EnsemblPlantsGene:GLYMA_11G036800	EntrezGene:100816782	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597
PANTHER:PTHR22597:SF8	PFAM:PF09733	ProteinID:KRH28171	ProteinID:KRH28171.1	SEG:seg	UniParc:UPI0006ED8C13
UniProt:A0A0R0HLN7	MapMan:12.3.3.1.1.3	MapMan:15.5.15	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:2648170..2660467

Molecular Weight (calculated)

49478.0 Da

IEP (calculated)

7.601

GRAVY (calculated)

-0.555

Length

425 amino acids

Sequence
(BLAST)

001: MCRQNSPVHH AGEEEIAADE SLLIYCKPVE LYNILYRRAL QNPSFLRRCL LYKIRARRKR RLRAGIVIFN YRDHYNILRK TEVTEDFSCP FCLMQCGSFK
101: GLRFHLCSSH DLFNFEFWVT EDYQAVNVSV KINILRSENV ADGVIPQSQT FFFCSRPRKR RRKDSVQNEK CTNVKFLELD SPEGIHNGFL EKDDDGRNYI
201: LSCKGENVSR TSRSEKILSR ERNDGGKFGP DHSCTMDDLE HVESSFNIPG VSIAMPQSSV DPECSKSICK SDPALPAKTK KLSMDRSDSR NRMLLQKRLF
301: FHSHRVQPMA LEQVLSDRDS EDEVDDDIAD LEDRRMLDDF VDVSKDEKQL MHLWNSFMRK QRVLADGHVP WACEAFSKLH GKELISSPAL FWCWRLFMIK
401: LWNHGLLDAC TMNNCSTILD SYRNE

Best Arabidopsis Sequence Match ( AT4G16845.1 )
(BLAST)

001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK

Arabidopsis Description

VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.