Factsheet for GSMUA_Achr2P11140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P24850_001
GSMUA_Achr3P05010_001
GSMUA_Achr4P31680_001
GSMUA_Achr5P02390_001
GSMUA_Achr5P26370_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35670.1	GSMUA_Achr1P24850_001	AT1G02580.1	15456723
AT2G35670.1	GSMUA_Achr1P24850_001	AT1G02580.1	16924116
AT2G35670.1	GSMUA_AchrUn_...	AT2G23380.1	15456723
AT2G35670.1	GSMUA_AchrUn_...	AT2G23380.1	16924116
AT2G35670.1	GSMUA_Achr1P24850_001	AT4G02020.1	15456723
AT2G35670.1	GSMUA_Achr1P24850_001	AT4G02020.1	16924116
AT4G16845.1	GSMUA_AchrUn_...	AT2G23380.1	15456723
AT4G16845.1	GSMUA_Achr1P24850_001	AT4G02020.1	15456723
AT5G51230.1	GSMUA_Achr10P...	AT1G30530.1	23778966
AT5G51230.1	GSMUA_Achr10P...	AT1G30530.1	23778966
AT5G51230.1	GSMUA_Achr3P05010_001	AT1G30530.1	23778966
AT5G51230.1	GSMUA_AchrUn_...	AT1G30530.1	23778966
AT5G51230.1	GSMUA_AchrUn_...	AT2G23380.1	15456723
AT5G51230.1	GSMUA_Achr5P26370_001	AT3G20740.1	23778966
AT5G51230.1	GSMUA_Achr1P24850_001	AT4G02020.1	15456723
AT5G51230.1	GSMUA_Achr1P24850_001	AT4G02020.1	23778966
AT5G51230.1	GSMUA_Achr4P31680_001	AT5G58230.1	23778966
AT5G51230.1	GSMUA_Achr5P02390_001	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1675g00010.t01	Wine grape	cytosol	63.96	57.26
TraesCSU01G194400.1	Wheat	nucleus	61.26	54.84
TraesCSU01G224600.1	Wheat	nucleus	61.26	54.84
CDY00458	Canola	cytosol	64.86	20.93
Bra015201.1-P	Field mustard	cytosol	63.96	20.64
VIT_02s0234g00050.t01	Wine grape	nucleus	63.96	18.83
KRH28171	Soybean	nucleus	63.96	16.71
KRH77315	Soybean	nucleus	63.96	16.59
Bra005316.1-P	Field mustard	nucleus	34.23	16.03
GSMUA_Achr2P11170_001	Banana	nucleus	91.89	14.78
CDY71414	Canola	nucleus	49.55	13.68
CDX76587	Canola	nucleus	49.55	13.0
Bra021078.1-P	Field mustard	nucleus	49.55	12.94
AT4G16845.1	Thale cress	nucleus	50.45	12.73
AT4G16810.1	Thale cress	nucleus	33.33	12.33
GSMUA_Achr4P29640_001	Banana	nucleus	71.17	11.93
AT5G51230.1	Thale cress	nucleus	65.77	11.57
Bra015200.1-P	Field mustard	nucleus, plastid	64.86	11.39
CDY00460	Canola	nucleus, plastid	64.86	11.39
CDX99960	Canola	nucleus	63.96	11.23
Solyc03g093640.2.1	Tomato	nucleus	63.96	11.13
VIT_16s0013g00860.t01	Wine grape	nucleus	65.77	11.03
CDY31712	Canola	nucleus	34.23	10.89
CDX91573	Canola	nucleus	58.56	10.32
Bra022541.1-P	Field mustard	nucleus	58.56	10.28
CDY16330	Canola	nucleus	58.56	10.28
CDY35632	Canola	cytosol	40.54	9.96
KRH33365	Soybean	nucleus	54.05	9.87
KRG90126	Soybean	nucleus	53.15	9.7
CDY42943	Canola	nucleus	40.54	9.68
Bra040097.1-P	Field mustard	nucleus	40.54	9.68
CDX84179	Canola	cytosol	33.33	9.07
CDX75032	Canola	mitochondrion, nucleus	30.63	8.9
Bra005262.1-P	Field mustard	mitochondrion	30.63	8.9
CDY33160	Canola	nucleus	30.63	7.39
AT2G35670.1	Thale cress	nucleus	34.23	5.03
KRH34601	Soybean	nucleus	31.53	4.46
CDX84180	Canola	cytosol	5.41	2.74
Bra029179.1-P	Field mustard	nucleus	20.72	2.66
VIT_02s0234g00020.t01	Wine grape	cytosol, extracellular, nucleus	5.41	2.59
CDY38857	Canola	nucleus	6.31	0.94
CDY43476	Canola	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr2P11140_001	EnsemblPlants:GSMUA_Achr2T11140_001	EnsemblPlantsGene:GSMUA_Achr2G11140_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF8	PFAM:PF09733	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002966032	UniProt:M0S705	MapMan:12.3.3.1.1.3	MapMan:15.5.15	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G11140_001]

Coordinates

chr2:-:14113429..14116019

Molecular Weight (calculated)

13091.7 Da

IEP (calculated)

4.537

GRAVY (calculated)

-0.071

Length

111 amino acids

Sequence
(BLAST)

001: MALEQVFLDR DSEDEVDDDI ADFKDRRMHD DFVDVTTDEK QIMHLWNSFV RKQRVLADGH MPWACEAFSQ LHVQDLARSP ALMWYNIQCI FVILAHLFVC
101: SIPFIPQLHL T

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.