CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89569
CDY07102
CDY17381
CDY22021
CDY38942

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G16845.1	CDX89569	AT2G23380.1	15456723
AT4G16845.1	CDY38942	AT2G23380.1	15456723
AT4G16845.1	CDY07102	AT4G02020.1	15456723
AT4G16845.1	CDY17381	AT4G02020.1	15456723
AT4G16845.1	CDY22021	AT4G02020.1	15456723

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42943	Canola	nucleus	88.72	86.24
CDY71414	Canola	nucleus	40.71	45.77
CDY43476	Canola	nucleus	15.04	45.64
CDX76587	Canola	nucleus	41.37	44.21
GSMUA_Achr2P11140_001	Banana	cytosol	9.96	40.54
AT4G16845.1	Thale cress	nucleus	38.27	39.32
TraesCSU01G224600.1	Wheat	nucleus	10.18	37.1
TraesCSU01G194400.1	Wheat	nucleus	10.18	37.1
CDY31712	Canola	nucleus	23.01	29.8
CDX84179	Canola	cytosol	24.11	26.72
CDY33160	Canola	nucleus	26.55	26.09
KRH77315	Soybean	nucleus	24.11	25.47
CDX75032	Canola	mitochondrion, nucleus	21.46	25.39
KRH28171	Soybean	nucleus	23.67	25.18
CDX84180	Canola	cytosol	10.62	21.92
CDY00458	Canola	cytosol	15.49	20.35
TraesCS4D01G183300.1	Wheat	nucleus	5.75	20.31
TraesCS5D01G388900.1	Wheat	nucleus	5.75	20.31
KXG37542	Sorghum	nucleus	25.44	19.13
Os09t0306800-01	Rice	cytosol, nucleus	25.44	18.98
HORVU5Hr1G054730.1	Barley	nucleus	25.89	18.37
TraesCS5D01G184200.2	Wheat	nucleus	25.66	18.18
TraesCS5A01G179600.1	Wheat	nucleus	25.66	18.18
TraesCS2B01G023900.1	Wheat	cytosol	24.11	18.17
HORVU2Hr1G000010.32	Barley	nucleus	24.11	17.99
TraesCS2D01G000600.1	Wheat	cytosol	23.89	17.91
TraesCS2A01G000100.1	Wheat	nucleus	23.89	17.88
TraesCS5B01G177400.2	Wheat	nucleus	25.89	17.81
CDX91573	Canola	nucleus	24.34	17.46
Zm00001d034036_P003	Maize	golgi	23.45	17.41
CDY16330	Canola	nucleus	24.34	17.41
CDX99960	Canola	nucleus	23.67	16.93
CDY00460	Canola	nucleus, plastid	23.67	16.93
OQU89244	Sorghum	nucleus	23.23	16.75
Os04t0162100-01	Rice	nucleus	22.57	16.35
Zm00001d020036_P002	Maize	nucleus	23.45	15.47
KXG25810	Sorghum	nucleus	20.58	15.35
TraesCS2B01G020400.3	Wheat	nucleus	20.8	14.64
HORVU2Hr1G000390.20	Barley	nucleus	20.8	14.22
TraesCS2A01G002500.1	Wheat	nucleus	20.35	14.2
CDY38857	Canola	nucleus	14.38	8.74
TraesCS3B01G073800.1	Wheat	nucleus	4.65	8.2

Protein Annotations

EnsemblPlants:CDY35632	EnsemblPlantsGene:GSBRNA2T00058999001	InterPro:Polycomb_protein_VEFS-Box	PANTHER:PTHR22597	PANTHER:PTHR22597:SF8	PFAM:PF09733
ProteinID:CDY35632	ProteinID:CDY35632.1	SEG:seg	UniParc:UPI0004EE977F	UniProt:A0A078HCV0	MapMan:12.3.3.1.1.3
MapMan:15.5.15	:	:	:	:	:

Description

BnaC01g21540DBnaC01g21540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCV0]

Coordinates

chrLK032356:+:305968..308931

Molecular Weight (calculated)

51560.4 Da

IEP (calculated)

4.699

GRAVY (calculated)

-0.594

Length

452 amino acids

Sequence
(BLAST)

001: MSQEDSQAKL SHDGEKHWMY LKPVRLYDML LCHSPSKPRF LRRNLNYKNQ EKGETRSASA GMVVFNFKDF DNTVQKTQGQ LVSVLPGLQL HLNSFHELLE
101: FEFMTSEENQ TVNVSVRLDA FKTKVIFYKL GNLRKPYNCL KYYSKPFKRT QVGGRNIPKR LNVTILPMDP PFLADDTETG TSLLNNGNPV AMMNVPDIGQ
201: SSGSGARESE GPAAKTENFS SSISLLQTRQ FYHSRTLQPM TLEEVMSDQD SDDEVDDEVA DFEYHHMIDD LEDVSPTEKD FMHLWNSFVR YQRVITDGQV
301: PWACEAFSKF HKKEFIESKP LHSCWRMFMI KLWDYGLVDA VTINKCNLII EDSEDDHSVN TNNNNSVDYG IDLNRNDTMD VDHNGVDLGI GLGRNTAMDV
401: NNNNVDRGID LNLTMNVNPS NVDRGIDLNR NDVMDADEDV NDSSYLSLSL SL

Best Arabidopsis Sequence Match ( AT4G16845.1 )
(BLAST)

001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK

Arabidopsis Description

VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.