Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G002500.1 | Wheat | nucleus | 94.39 | 93.52 |
| HORVU2Hr1G000390.20 | Barley | nucleus | 83.18 | 80.79 |
| VIT_00s1675g00010.t01 | Wine grape | cytosol | 12.31 | 63.71 |
| TraesCS3B01G073800.1 | Wheat | nucleus | 21.34 | 53.52 |
| TraesCS2B01G023900.1 | Wheat | cytosol | 49.69 | 53.17 |
| TraesCS5B01G177400.2 | Wheat | nucleus | 54.05 | 52.82 |
| Os04t0162100-01 | Rice | nucleus | 48.75 | 50.16 |
| KXG25810 | Sorghum | nucleus | 44.08 | 46.7 |
| CDY43476 | Canola | nucleus | 9.97 | 42.95 |
| GSMUA_Achr4P29640_001 | Banana | nucleus | 43.93 | 42.6 |
| AT5G51230.1 | Thale cress | nucleus | 41.28 | 42.0 |
| KRH28171 | Soybean | nucleus | 27.73 | 41.88 |
| VIT_16s0013g00860.t01 | Wine grape | nucleus | 43.15 | 41.84 |
| KRH77315 | Soybean | nucleus | 27.73 | 41.59 |
| CDX91573 | Canola | nucleus | 40.65 | 41.43 |
| CDY16330 | Canola | nucleus | 40.65 | 41.3 |
| Bra022541.1-P | Field mustard | nucleus | 40.65 | 41.3 |
| Solyc03g093640.2.1 | Tomato | nucleus | 40.97 | 41.22 |
| VIT_02s0234g00050.t01 | Wine grape | nucleus | 24.14 | 41.11 |
| Bra015200.1-P | Field mustard | nucleus, plastid | 40.34 | 40.98 |
| CDY00460 | Canola | nucleus, plastid | 40.34 | 40.98 |
| CDX99960 | Canola | nucleus | 40.19 | 40.82 |
| GSMUA_Achr2P11170_001 | Banana | nucleus | 43.77 | 40.72 |
| KRH33365 | Soybean | nucleus | 35.51 | 37.5 |
| KRG90126 | Soybean | nucleus | 35.05 | 37.01 |
| Bra015201.1-P | Field mustard | cytosol | 18.54 | 34.59 |
| CDY00458 | Canola | cytosol | 18.54 | 34.59 |
| VIT_02s0234g00020.t01 | Wine grape | cytosol, extracellular, nucleus | 11.68 | 32.33 |
| CDY71414 | Canola | nucleus | 18.85 | 30.1 |
| AT4G16845.1 | Thale cress | nucleus | 19.78 | 28.86 |
| CDX76587 | Canola | nucleus | 18.85 | 28.61 |
| Bra021078.1-P | Field mustard | nucleus | 18.54 | 28.0 |
| CDX84180 | Canola | cytosol | 8.88 | 26.03 |
| Bra005316.1-P | Field mustard | nucleus | 9.19 | 24.89 |
| Bra040097.1-P | Field mustard | nucleus | 15.11 | 20.86 |
| CDY42943 | Canola | nucleus | 15.11 | 20.86 |
| CDY35632 | Canola | cytosol | 14.64 | 20.8 |
| CDY33160 | Canola | nucleus | 14.49 | 20.22 |
| CDY31712 | Canola | nucleus | 10.75 | 19.77 |
| CDY38857 | Canola | nucleus | 22.74 | 19.62 |
| KRH34601 | Soybean | nucleus | 22.74 | 18.62 |
| CDX75032 | Canola | mitochondrion, nucleus | 10.75 | 18.06 |
| Bra005262.1-P | Field mustard | mitochondrion | 10.75 | 18.06 |
| Bra029179.1-P | Field mustard | nucleus | 24.14 | 17.94 |
| CDX84179 | Canola | cytosol | 10.9 | 17.16 |
| AT4G16810.1 | Thale cress | nucleus | 6.23 | 13.33 |
| AT2G35670.1 | Thale cress | nucleus | 14.02 | 11.92 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G020400.3 | EnsemblPlantsGene:TraesCS2B01G020400 | InterPro:Polycomb_protein_VEFS-Box | PANTHER:PTHR22597 | PANTHER:PTHR22597:SF0 | PFAM:PF09733 |
| SEG:seg | MapMan:12.3.3.1.1.3 | MapMan:15.5.15 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:9731069..9740936
Molecular Weight (calculated)
72574.0 Da
IEP (calculated)
7.388
GRAVY (calculated)
-0.539
Length
642 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGLALPNHD TANNGFSYPR STEQTCDQKS RAQLSPDDEL SAKESLALYW KPVELYDTIR QRAIEKPPSL QRCLRYKIEA KRRKRIQISV SISGSTNTRL
101: PAHGIFPLHV LLARSSKDAP GEGHSPMYRF SRACVLTSFC ESGDSGHTEA TFTIPNMKNL STSQVRGLDI ILISRGQGGQ NLSENCSENH AEYSSPQKLG
201: GQCFWGKIPI DSLGSSLDCV TLSLGRTVEL TSEISMNPGF IEPSLLEHDS CLTFCSLKAN ATGSYKLKAS IDVQEAGARN MRLSPYNIYS YDDIPQSLLP
301: KIIRLRTGNV LFNYKYYKNL YKSEVTEDFT CSFCLVPCGS FKGLECHLTS SHDLFRFEFW VSKEYQAVNV SLKIAARREE LLTVAGNDPG SRVFFYRSSR
401: FKRCKISETT TEKTKDVYPH ITELGSPGMT MPVDQDIVEP RSPRNTVPPP AEMTESGSSK DAQDGSVVDY VPKENGINVP ERTALQSDRA RKLPVDLDDP
501: SLALLKKREF FHSQKAQRME LDVLYSDHDS EDELDHDIAD FEDRTLLGGF SDVAKEEKHI MHMWNSFKRR QRILADGHVP WACEAFTHQH GQELVQNPRL
601: RWCWRVLMIK LWNHGLLNGR TMNICNKHLE VLESQRADPK QS
101: PAHGIFPLHV LLARSSKDAP GEGHSPMYRF SRACVLTSFC ESGDSGHTEA TFTIPNMKNL STSQVRGLDI ILISRGQGGQ NLSENCSENH AEYSSPQKLG
201: GQCFWGKIPI DSLGSSLDCV TLSLGRTVEL TSEISMNPGF IEPSLLEHDS CLTFCSLKAN ATGSYKLKAS IDVQEAGARN MRLSPYNIYS YDDIPQSLLP
301: KIIRLRTGNV LFNYKYYKNL YKSEVTEDFT CSFCLVPCGS FKGLECHLTS SHDLFRFEFW VSKEYQAVNV SLKIAARREE LLTVAGNDPG SRVFFYRSSR
401: FKRCKISETT TEKTKDVYPH ITELGSPGMT MPVDQDIVEP RSPRNTVPPP AEMTESGSSK DAQDGSVVDY VPKENGINVP ERTALQSDRA RKLPVDLDDP
501: SLALLKKREF FHSQKAQRME LDVLYSDHDS EDELDHDIAD FEDRTLLGGF SDVAKEEKHI MHMWNSFKRR QRILADGHVP WACEAFTHQH GQELVQNPRL
601: RWCWRVLMIK LWNHGLLNGR TMNICNKHLE VLESQRADPK QS
001: MCRQNCRAKS SPEEVISTDE NLLIYCKPVR LYNIFHLRSL GNPSFLPRCL NYKIGAKRKR KSRSTGMVVF NYKDCNNTLQ RTEVREDCSC PFCSMLCGSF
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
101: KGLQFHLNSS HDLFEFEFKL LEEYQTVNVS VKLNSFIFEE EGSDDDKFEP FSLCSKPRKR RQRGGRNNTR RLKVCFLPLD SPSLANGTEN GIALLNDGNR
201: GLGYPEATEL AGQFEMTSNI PPAIAHSSLD AGAKVILTTE AVVPATKTRK LSAERSEARS HLLLQKRQFY HSHRVQPMAL EQVMSDRDSE DEVDDDVADF
301: EDRQMLDDFV DVNKDEKQFM HLWNSFVRKQ RVIADGHISW ACEVFSRFYE KELHCYSSLF WCWRLFLIKL WNHGLVDSAT INNCNTILEN CRNTSVTNNN
401: NNSVDHPSDS NTNNNNIVDH PNDIKNKNNV DNKDNNSRDK
Arabidopsis Description
VRN2Polycomb group protein VERNALIZATION 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8W5B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.