CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85476
CDX88663
CDX89569
CDX89931
CDY02736
CDY02805
CDY07102
CDY15444
CDY17381
CDY18131
CDY22021
CDY27567
CDY32715
CDY38942
CDY43875
CDY53612
CDY58569
CDY62688

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51230.1	CDX89931	AT1G02930.1	23778966
AT5G51230.1	CDY15444	AT1G02930.1	23778966
AT5G51230.1	CDY18131	AT1G02930.1	23778966
AT5G51230.1	CDX85476	AT1G30530.1	23778966
AT5G51230.1	CDY02736	AT1G30530.1	23778966
AT5G51230.1	CDX89569	AT2G23380.1	15456723
AT5G51230.1	CDY38942	AT2G23380.1	15456723
AT5G51230.1	CDY27567	AT3G20740.1	23778966
AT5G51230.1	CDY53612	AT3G20740.1	23778966
AT5G51230.1	CDY07102	AT4G02020.1	15456723
AT5G51230.1	CDY17381	AT4G02020.1	15456723
AT5G51230.1	CDY22021	AT4G02020.1	15456723
AT5G51230.1	CDY07102	AT4G02020.1	23778966
AT5G51230.1	CDY17381	AT4G02020.1	23778966
AT5G51230.1	CDY22021	AT4G02020.1	23778966
AT5G51230.1	CDX88663	AT5G58230.1	23778966
AT5G51230.1	CDY02805	AT5G58230.1	23778966
AT5G51230.1	CDY32715	AT5G58230.1	23778966
AT5G51230.1	CDY43875	AT5G58230.1	23778966
AT5G51230.1	CDY58569	AT5G58230.1	23778966
AT5G51230.1	CDY62688	AT5G58230.1	23778966

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022541.1-P	Field mustard	nucleus	100.0	100.0
CDX91573	Canola	nucleus	95.41	95.71
CDY00460	Canola	nucleus, plastid	81.8	81.8
AT5G51230.1	Thale cress	nucleus	81.49	81.62
CDX99960	Canola	nucleus	81.17	81.17
TraesCSU01G224600.1	Wheat	nucleus	13.92	70.97
TraesCSU01G194400.1	Wheat	nucleus	13.92	70.97
GSMUA_Achr2P11140_001	Banana	cytosol	10.28	58.56
VIT_16s0013g00860.t01	Wine grape	nucleus	60.6	57.85
Solyc03g093640.2.1	Tomato	nucleus	55.38	54.86
KRH33365	Soybean	nucleus	50.79	52.8
KRG90126	Soybean	nucleus	50.32	52.3
CDY00458	Canola	cytosol	28.01	51.45
Os09t0306800-01	Rice	cytosol, nucleus	48.58	50.66
KXG37542	Sorghum	nucleus	46.99	49.42
TraesCS2B01G023900.1	Wheat	cytosol	46.2	48.67
HORVU5Hr1G054730.1	Barley	nucleus	49.05	48.67
TraesCS2A01G000100.1	Wheat	nucleus	46.2	48.34
CDY43476	Canola	nucleus	11.39	48.32
TraesCS2D01G000600.1	Wheat	cytosol	46.04	48.26
TraesCS5A01G179600.1	Wheat	nucleus	48.58	48.12
TraesCS5D01G184200.2	Wheat	nucleus	48.58	48.12
OQU89244	Sorghum	nucleus	47.63	48.01
HORVU2Hr1G000010.32	Barley	nucleus	45.25	47.19
TraesCS5B01G177400.2	Wheat	nucleus	48.58	46.73
Zm00001d034036_P003	Maize	golgi	44.46	46.14
Zm00001d020036_P002	Maize	nucleus	47.78	44.09
Os04t0162100-01	Rice	nucleus	41.93	42.47
TraesCS2A01G002500.1	Wheat	nucleus	42.09	41.05
TraesCS2B01G020400.3	Wheat	nucleus	41.3	40.65
CDY71414	Canola	nucleus	25.63	40.3
KXG25810	Sorghum	nucleus	38.29	39.93
HORVU2Hr1G000390.20	Barley	nucleus	40.51	38.73
CDX76587	Canola	nucleus	25.32	37.83
TraesCS3B01G073800.1	Wheat	nucleus	15.03	37.11
TraesCS4D01G183300.1	Wheat	nucleus	6.8	33.59
CDY38857	Canola	nucleus	38.77	32.93
TraesCS5D01G388900.1	Wheat	nucleus	6.65	32.81
CDX84180	Canola	cytosol	8.86	25.57
CDY42943	Canola	nucleus	18.51	25.16
CDY35632	Canola	cytosol	17.41	24.34
KRH34601	Soybean	nucleus	29.27	23.6
CDY31712	Canola	nucleus	11.55	20.92
CDY33160	Canola	nucleus	14.87	20.43
CDX75032	Canola	mitochondrion, nucleus	11.39	18.85
CDX84179	Canola	cytosol	11.55	17.89

Protein Annotations

EnsemblPlants:CDY16330	EnsemblPlantsGene:GSBRNA2T00090852001	InterPro:Polycomb_protein_VEFS-Box	ncoils:Coil	PANTHER:PTHR22597	PANTHER:PTHR22597:SF0
PFAM:PF09733	ProteinID:CDY16330	ProteinID:CDY16330.1	SEG:seg	UniParc:UPI0002545573	UniProt:A0A078FPD6
MapMan:12.3.3.1.1.3	MapMan:15.5.15	:	:	:	:

Description

BnaA02g11340DBnaA02g11340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPD6]

Coordinates

chrLK032063:-:11365..16426

Molecular Weight (calculated)

71356.3 Da

IEP (calculated)

7.954

GRAVY (calculated)

-0.378

Length

632 amino acids

Sequence
(BLAST)

001: MPGIPLVTRQ TSSCSRSTDQ MCNEDPRVHL SEEEKIAAEE SLEAYCKPVE FYNIIQRRAI KKPLFLQRCL NYKIEAKHKS RIQMSVFLSG TTDAGVQTQK
101: LFPLYILLAR LVSPKPAAEY SAVYRFTRAC ILTSVLGVDG VSQAQANFLL PDLSRLALDA KSGSLAILFI SFAGAQNSQF GIDSSTIHSG NIGGHCLWSK
201: IPLQSLYATW QNSADLELGQ KVNSVSLVEM QPCFIKLKSM AEEKCVSIQV PSNPLTSSSP QQVQVTISAE LVGATEKSPY SSFSYNGISA SSLVQIIRLR
301: KGNVVFNYKY YNNKLQKTEV TEDFSCSICL VKCGSFKGLK FHLPATHDLF NFEFWVSEEY QAVNVSLKSE TMIAEINEGG VDPKQQTLYF SSKKYRRRKQ
401: KSQVRSSRQG RQLGLGCEVL DKTDDAHPLR SEKNRIPPGN GVGESSGQRV LPADMQSGGD PDNVQSVAGS TMLQFAKTRK LSIERSELRN RSLLQKRQFF
501: HSHRSQPMAI EQVLSDRDSE DEVDDDVADF EDRRMLDDFV DVTKDEKEMM HMWNSFVRKQ QVLADGHIPW ACEAFSRLHG PIMVQRPDLI WDWRMFMVKL
601: WNHGLLDART MDKCNVILEK LQTEDPETTI FK

Best Arabidopsis Sequence Match ( AT5G51230.1 )
(BLAST)

001: MPGIPLVSRE TSSCSRSTEQ MCHEDSRLRI SEEEEIAAEE SLAAYCKPVE LYNIIQRRAI RNPLFLQRCL HYKIEAKHKR RIQMTVFLSG AIDAGVQTQK
101: LFPLYILLAR LVSPKPVAEY SAVYRFSRAC ILTGGLGVDG VSQAQANFLL PDMNRLALEA KSGSLAILFI SFAGAQNSQF GIDSGKIHSG NIGGHCLWSK
201: IPLQSLYASW QKSPNMDLGQ RVDTVSLVEM QPCFIKLKSM SEEKCVSIQV PSNPLTSSSP QQVQVTISAE EVGSTEKSPY SSFSYNDISS SSLLQIIRLR
301: TGNVVFNYRY YNNKLQKTEV TEDFSCPFCL VKCASFKGLR YHLPSTHDLL NFEFWVTEEF QAVNVSLKTE TMISKVNEDD VDPKQQTFFF SSKKFRRRRQ
401: KSQVRSSRQG PHLGLGCEVL DKTDDAHSVR SEKSRIPPGK HYERIGGAES GQRVPPGTSP ADVQSCGDPD YVQSIAGSTM LQFAKTRKIS IERSDLRNRS
501: LLQKRQFFHS HRAQPMALEQ VLSDRDSEDE VDDDVADFED RRMLDDFVDV TKDEKQMMHM WNSFVRKQRV LADGHIPWAC EAFSRLHGPI MVRTPHLIWC
601: WRVFMVKLWN HGLLDARTMN NCNTFLEQLQ I

Arabidopsis Description

EMF2Polycomb group protein EMBRYONIC FLOWER 2 [Source:UniProtKB/Swiss-Prot;Acc:Q8L6Y4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.