Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G02930.1 | CDX89931 | AT1G02920.1 | 21798944 |
| AT1G02930.1 | CDY15444 | AT1G02920.1 | 21798944 |
| AT1G02930.1 | CDY18131 | AT1G02920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89931 | Canola | cytosol, mitochondrion | 98.57 | 98.57 |
| CDY15444 | Canola | cytosol, mitochondrion | 97.14 | 97.14 |
| AT1G02930.1 | Thale cress | cytosol | 81.43 | 82.21 |
| AT1G02920.1 | Thale cress | cytosol | 81.43 | 81.82 |
| CDY65569 | Canola | cytosol, mitochondrion | 79.05 | 77.93 |
| CDX97273 | Canola | cytosol, mitochondrion | 78.57 | 77.46 |
| CDY50374 | Canola | cytosol, mitochondrion | 77.62 | 76.53 |
| CDY22058 | Canola | cytosol, mitochondrion | 76.19 | 75.12 |
| CDY18016 | Canola | cytosol, mitochondrion | 75.24 | 74.18 |
| CDX90934 | Canola | cytosol, mitochondrion | 75.24 | 74.18 |
| CDX90933 | Canola | cytosol | 71.9 | 70.89 |
| CDY18015 | Canola | cytosol | 71.9 | 70.89 |
| CDY50375 | Canola | cytosol, mitochondrion | 70.95 | 69.95 |
| VIT_07s0005g00010.t01 | Wine grape | cytosol | 62.86 | 61.68 |
| VIT_07s0005g00030.t01 | Wine grape | cytosol | 62.38 | 61.22 |
| Solyc06g009020.2.1 | Tomato | plastid | 60.95 | 60.09 |
| PGSC0003DMT400037918 | Potato | cytosol | 60.48 | 59.62 |
| Solyc06g009040.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 59.05 | 58.49 |
| PGSC0003DMT400029561 | Potato | cytosol | 59.52 | 58.41 |
| CDX80129 | Canola | cytosol | 57.62 | 56.02 |
| Solyc09g074850.2.1 | Tomato | cytosol | 53.33 | 56.0 |
| CDX95731 | Canola | cytosol | 57.14 | 55.81 |
| CDY53015 | Canola | cytosol | 51.9 | 54.5 |
| CDY07846 | Canola | cytosol | 55.24 | 53.21 |
| CDY37454 | Canola | cytosol, mitochondrion | 59.52 | 49.8 |
| CDY32486 | Canola | cytosol, mitochondrion | 58.57 | 49.0 |
| CDX89927 | Canola | cytosol | 58.57 | 48.62 |
| CDY71513 | Canola | plastid | 58.1 | 46.21 |
| CDX89147 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 45.71 | 43.84 |
| CDX93963 | Canola | cytosol | 45.24 | 43.38 |
| CDY43144 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plastid | 40.95 | 40.95 |
| CDY28744 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plastid | 40.0 | 40.0 |
| CDY16947 | Canola | cytosol | 40.48 | 39.91 |
| CDX97788 | Canola | cytosol | 40.48 | 39.53 |
| CDY29636 | Canola | cytosol | 40.48 | 39.53 |
| CDX69395 | Canola | cytosol | 40.0 | 39.44 |
| CDY37204 | Canola | cytosol | 47.14 | 38.98 |
| CDY23980 | Canola | cytosol | 39.52 | 38.6 |
| CDX84816 | Canola | cytosol | 39.52 | 38.6 |
| CDX85469 | Canola | cytosol, mitochondrion | 39.52 | 38.6 |
| CDY02726 | Canola | cytosol | 38.1 | 37.38 |
| CDY07850 | Canola | cytosol, plastid | 58.57 | 36.94 |
| CDY18136 | Canola | cytosol | 58.1 | 36.64 |
| CDX84815 | Canola | cytosol, endoplasmic reticulum | 36.19 | 35.35 |
| CDY23979 | Canola | endoplasmic reticulum | 35.71 | 34.88 |
| CDY02724 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 38.57 | 23.68 |
| CDX89928 | Canola | endoplasmic reticulum | 1.9 | 1.65 |
| CDY18134 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| KEGG:00480+2.5.1.18 | KEGG:00980+2.5.1.18 | KEGG:00982+2.5.1.18 | KEGG:00983+2.5.1.18 | Gene3D:1.20.1050.10 | MapMan:18.8.1.5 |
| Gene3D:3.40.30.10 | UniProt:A0A078FYR5 | EnsemblPlants:CDY18131 | ProteinID:CDY18131 | ProteinID:CDY18131.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00002652001 | InterPro:GST_C | InterPro:GST_Phi_C | InterPro:Glutathione-S-Trfase_C-like |
| InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N | InterPro:IPR004045 | InterPro:IPR010987 | PFAM:PF00043 | PFAM:PF02798 |
| PFscan:PS50404 | PFscan:PS50405 | PANTHER:PTHR43900 | PANTHER:PTHR43900:SF7 | SUPFAM:SSF47616 | SUPFAM:SSF52833 |
| InterPro:Thioredoxin-like_sf | UniParc:UPI0004EF1D42 | SEG:seg | : | : | : |
Description
BnaC05g01540DBnaC05g01540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYR5]
Coordinates
chrLK032083:-:15214..16352
Molecular Weight (calculated)
23721.5 Da
IEP (calculated)
6.683
GRAVY (calculated)
-0.245
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGIKVFGHP ASTATRRVLI ALHEKKLDFE LVHIDLKDGE HKKEPFLSRN PFGKIPAFED GDFKLFESRA ITQYIAHEYA DKGNQLLSPG SKNMAILAMG
101: MEIEAHEFDS VASKLGWEQI FKNFFGLTTD QAVVKEEEVK LGKVLDNYEA RLGESKYLAC DHFTLVDLHH IPVIQYLLGT PTKKLFDERP HVSAWVADIT
201: SRPSSQKILL
101: MEIEAHEFDS VASKLGWEQI FKNFFGLTTD QAVVKEEEVK LGKVLDNYEA RLGESKYLAC DHFTLVDLHH IPVIQYLLGT PTKKLFDERP HVSAWVADIT
201: SRPSSQKILL
001: MAGIKVFGHP ASTATRRVLI ALHEKNVDFE FVHVELKDGE HKKEPFILRN PFGKVPAFED GDFKIFESRA ITQYIAHEFS DKGNNLLSTG KDMAIIAMGI
101: EIESHEFDPV GSKLVWEQVL KPLYGMTTDK TVVEEEEAKL AKVLDVYEHR LGESKYLASD HFTLVDLHTI PVIQYLLGTP TKKLFDERPH VSAWVADITS
201: RPSAQKVL
101: EIESHEFDPV GSKLVWEQVL KPLYGMTTDK TVVEEEEAKL AKVLDVYEHR LGESKYLASD HFTLVDLHTI PVIQYLLGTP TKKLFDERPH VSAWVADITS
201: RPSAQKVL
Arabidopsis Description
GSTF6Glutathione S-transferase F6 [Source:UniProtKB/Swiss-Prot;Acc:P42760]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.