Factsheet for PGSC0003DMT400029561

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029561
PGSC0003DMT400037918

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02930.1	PGSC0003DMT400029561	AT1G02920.1	21798944
AT1G02930.1	PGSC0003DMT400037918	AT1G02920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074850.2.1	Tomato	cytosol	86.92	93.0
PGSC0003DMT400037918	Potato	cytosol	70.09	70.42
VIT_07s0005g00010.t01	Wine grape	cytosol	65.42	65.42
VIT_07s0005g00030.t01	Wine grape	cytosol	63.08	63.08
CDY15444	Canola	cytosol, mitochondrion	58.88	60.0
Bra030515.1-P	Field mustard	cytosol, mitochondrion	58.88	60.0
CDY18131	Canola	cytosol, mitochondrion	58.41	59.52
KRH71552	Soybean	cytosol	60.28	59.17
CDX89931	Canola	cytosol, mitochondrion	57.94	59.05
Bra033358.1-P	Field mustard	cytosol, mitochondrion	57.94	59.05
Bra018543.1-P	Field mustard	cytosol, mitochondrion	58.41	58.69
CDY18015	Canola	cytosol	58.41	58.69
CDY65569	Canola	cytosol, mitochondrion	58.41	58.69
CDX97273	Canola	cytosol, mitochondrion	58.41	58.69
AT2G02930.1	Thale cress	cytosol, mitochondrion	57.94	58.49
CDY50374	Canola	cytosol, mitochondrion	57.94	58.22
AT1G02920.1	Thale cress	cytosol	56.54	57.89
CDY22058	Canola	cytosol, mitochondrion	57.48	57.75
CDX90933	Canola	cytosol	57.48	57.75
Bra000875.1-P	Field mustard	cytosol	57.48	57.75
AT1G02930.1	Thale cress	cytosol	56.07	57.69
Bra036259.1-P	Field mustard	cytosol, mitochondrion	57.01	57.28
AT4G02520.1	Thale cress	cytosol, mitochondrion	56.54	57.08
CDX80129	Canola	cytosol	57.48	56.94
Bra036260.1-P	Field mustard	cytosol, mitochondrion	56.54	56.81
Bra004434.1-P	Field mustard	cytosol	52.8	56.5
CDX90934	Canola	cytosol, mitochondrion	56.07	56.34
CDY53015	Canola	cytosol	52.34	56.0
CDY18016	Canola	cytosol, mitochondrion	55.61	55.87
Bra000876.1-P	Field mustard	cytosol, mitochondrion	55.14	55.4
CDX95731	Canola	cytosol	55.61	55.35
CDY50375	Canola	cytosol, mitochondrion	54.67	54.93
Bra000460.1-P	Field mustard	cytosol	55.14	54.88
AT2G47730.2	Thale cress	plastid	58.41	47.53
CDY71513	Canola	plastid	56.07	45.45
CDY07846	Canola	cytosol	46.26	45.41
Bra024517.1-P	Field mustard	cytosol	37.38	44.94
CDX89927	Canola	cytosol	52.8	44.66
AT1G02950.5	Thale cress	cytosol	52.8	44.31
Bra032578.1-P	Field mustard	cytosol	49.53	43.62
CDY37454	Canola	cytosol, mitochondrion	50.0	42.63
Bra033359.1-P	Field mustard	endoplasmic reticulum	49.07	42.34
Bra033361.1-P	Field mustard	cytosol	36.92	42.25
CDY32486	Canola	cytosol, mitochondrion	49.53	42.23
PGSC0003DMT400075626	Potato	cytosol	43.46	42.08
PGSC0003DMT400043105	Potato	cytosol, endoplasmic reticulum	38.78	36.09
AT1G02940.2	Thale cress	endoplasmic reticulum	47.2	35.94
CDY18136	Canola	cytosol	52.34	33.63
CDY07850	Canola	cytosol, plastid	50.47	32.43
Bra033360.1-P	Field mustard	endoplasmic reticulum	2.34	2.54
CDX89928	Canola	endoplasmic reticulum	2.34	2.07

Protein Annotations

KEGG:00480+2.5.1.18	KEGG:00980+2.5.1.18	KEGG:00982+2.5.1.18	KEGG:00983+2.5.1.18	Gene3D:1.20.1050.10	EntrezGene:102601652
MapMan:18.8.1.5	Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:GST_C
InterPro:GST_Phi_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987
UniProt:M1AT04	PFAM:PF00043	PFAM:PF02798	EnsemblPlantsGene:PGSC0003DMG402011367	PGSC:PGSC0003DMG402011367	EnsemblPlants:PGSC0003DMT400029561
PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR43900	PANTHER:PTHR43900:SF7	SUPFAM:SSF47616	SUPFAM:SSF52833
InterPro:Thioredoxin-like_sf	UniParc:UPI0002961E28	RefSeq:XP_006359403.1	:	:	:

Description

Glutathione S-transferase APIC [Source:PGSC_GENE;Acc:PGSC0003DMG402011367]

Coordinates

chr9:+:52383311..52385783

Molecular Weight (calculated)

24372.7 Da

IEP (calculated)

6.161

GRAVY (calculated)

-0.112

Length

214 amino acids

Sequence
(BLAST)

001: MAIKVHGIPL STATMRVVSC LIEKDLDFEF VFVDMANEEH KKHPFLSLNP FAQVPAFEDG DLKLFESRAI TQYIAHTYAS NGIQLILQDP KKMAIMSIWM
101: EVEGQKFEPL ASKLTWELVI KPMIGMGSTN DDIVKESEEQ LSKVLDIYET RLTESKYLGG DSFTLVDLHH IPNIYHLMNT KAKALFDSRP RVSAWCADIL
201: ARPAWMKGLE KLQK

Best Arabidopsis Sequence Match ( AT2G47730.1 )
(BLAST)

001: MGAIQARLPL FLSPPSIKHH TFLHSSSSNS NFKIRSNKSS SSSSSSIIMA SIKVHGVPMS TATMRVLATL YEKDLQFELI PVDMRAGAHK QEAHLALNPF
101: GQIPALEDGD LTLFESRAIT QYLAEEYSEK GEKLISQDCK KVKATTNVWL QVEGQQFDPN ASKLAFERVF KGMFGMTTDP AAVQELEGKL QKVLDVYEAR
201: LAKSEFLAGD SFTLADLHHL PAIHYLLGTD SKVLFDSRPK VSEWIKKISA RPAWAKVIDL QKQ

Arabidopsis Description

GSTF8Glutathione S-transferase F8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96266]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.