Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G02930.1 | CDX89931 | AT1G02920.1 | 21798944 |
| AT1G02930.1 | CDY15444 | AT1G02920.1 | 21798944 |
| AT1G02930.1 | CDY18131 | AT1G02920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033358.1-P | Field mustard | cytosol, mitochondrion | 100.0 | 100.0 |
| CDY18131 | Canola | cytosol, mitochondrion | 98.57 | 98.57 |
| CDY15444 | Canola | cytosol, mitochondrion | 96.19 | 96.19 |
| AT1G02930.1 | Thale cress | cytosol | 81.43 | 82.21 |
| AT1G02920.1 | Thale cress | cytosol | 81.43 | 81.82 |
| CDY65569 | Canola | cytosol, mitochondrion | 78.1 | 77.0 |
| CDX97273 | Canola | cytosol, mitochondrion | 77.62 | 76.53 |
| CDY50374 | Canola | cytosol, mitochondrion | 76.67 | 75.59 |
| CDY22058 | Canola | cytosol, mitochondrion | 75.24 | 74.18 |
| CDY18016 | Canola | cytosol, mitochondrion | 74.29 | 73.24 |
| CDX90934 | Canola | cytosol, mitochondrion | 74.29 | 73.24 |
| CDX90933 | Canola | cytosol | 70.95 | 69.95 |
| CDY18015 | Canola | cytosol | 70.95 | 69.95 |
| CDY50375 | Canola | cytosol, mitochondrion | 70.0 | 69.01 |
| VIT_07s0005g00030.t01 | Wine grape | cytosol | 62.86 | 61.68 |
| VIT_07s0005g00010.t01 | Wine grape | cytosol | 62.86 | 61.68 |
| Solyc06g009020.2.1 | Tomato | plastid | 60.48 | 59.62 |
| PGSC0003DMT400037918 | Potato | cytosol | 60.0 | 59.15 |
| Solyc06g009040.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 58.57 | 58.02 |
| PGSC0003DMT400029561 | Potato | cytosol | 59.05 | 57.94 |
| CDX95731 | Canola | cytosol | 57.62 | 56.28 |
| CDX80129 | Canola | cytosol | 57.62 | 56.02 |
| Solyc09g074850.2.1 | Tomato | cytosol | 52.86 | 55.5 |
| CDY53015 | Canola | cytosol | 51.9 | 54.5 |
| CDY07846 | Canola | cytosol | 55.24 | 53.21 |
| CDY37454 | Canola | cytosol, mitochondrion | 59.52 | 49.8 |
| CDY32486 | Canola | cytosol, mitochondrion | 58.57 | 49.0 |
| CDX89927 | Canola | cytosol | 58.57 | 48.62 |
| CDY71513 | Canola | plastid | 58.1 | 46.21 |
| CDX89147 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 46.19 | 44.29 |
| CDX93963 | Canola | cytosol | 45.71 | 43.84 |
| CDY43144 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plastid | 40.48 | 40.48 |
| CDY28744 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plastid | 39.52 | 39.52 |
| CDX69395 | Canola | cytosol | 40.0 | 39.44 |
| CDY29636 | Canola | cytosol | 40.0 | 39.07 |
| CDX97788 | Canola | cytosol | 40.0 | 39.07 |
| CDY37204 | Canola | cytosol | 47.14 | 38.98 |
| CDY16947 | Canola | cytosol | 39.52 | 38.97 |
| CDX85469 | Canola | cytosol, mitochondrion | 39.52 | 38.6 |
| CDY23980 | Canola | cytosol | 39.05 | 38.14 |
| CDX84816 | Canola | cytosol | 39.05 | 38.14 |
| CDY02726 | Canola | cytosol | 38.1 | 37.38 |
| CDY07850 | Canola | cytosol, plastid | 58.57 | 36.94 |
| CDY18136 | Canola | cytosol | 58.1 | 36.64 |
| CDX84815 | Canola | cytosol, endoplasmic reticulum | 36.19 | 35.35 |
| CDY23979 | Canola | endoplasmic reticulum | 35.71 | 34.88 |
| CDY02724 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 38.57 | 23.68 |
| CDX89928 | Canola | endoplasmic reticulum | 1.9 | 1.65 |
| CDY18134 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
| KEGG:00480+2.5.1.18 | KEGG:00980+2.5.1.18 | KEGG:00982+2.5.1.18 | KEGG:00983+2.5.1.18 | Gene3D:1.20.1050.10 | MapMan:18.8.1.5 |
| Gene3D:3.40.30.10 | EnsemblPlants:CDX89931 | ProteinID:CDX89931 | ProteinID:CDX89931.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00150415001 | InterPro:GST_C | InterPro:GST_Phi_C | InterPro:Glutathione-S-Trfase_C-like | InterPro:Glutathione-S-Trfase_C_sf |
| InterPro:Glutathione_S-Trfase_N | InterPro:IPR004045 | InterPro:IPR010987 | PFAM:PF00043 | PFAM:PF02798 | PFscan:PS50404 |
| PFscan:PS50405 | PANTHER:PTHR43900 | PANTHER:PTHR43900:SF7 | SUPFAM:SSF47616 | SUPFAM:SSF52833 | InterPro:Thioredoxin-like_sf |
| UniParc:UPI0001B63C14 | SEG:seg | : | : | : | : |
Description
BnaA10g01510D
Coordinates
chrLK031861:+:819936..821282
Molecular Weight (calculated)
23650.4 Da
IEP (calculated)
6.514
GRAVY (calculated)
-0.230
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGIKVFGHP ASTATRRVLI ALHEKELDFE LVHIDLKDGE HKKEPFLSRN PFGKIPAFED GGFKLFESRA ITQYIAHEYA DKGNQLLSPG SKNMAILAMG
101: MEIEAHEFDS VASKLGWEQI FKNFFGLTTD QAVVKEEEVK LGKVLDNYEA RLGESKYLAC DHFTLVDLHH IPVIQYLLGT PTKKLFDERP HVSAWVADIT
201: SRPSSQKVLL
101: MEIEAHEFDS VASKLGWEQI FKNFFGLTTD QAVVKEEEVK LGKVLDNYEA RLGESKYLAC DHFTLVDLHH IPVIQYLLGT PTKKLFDERP HVSAWVADIT
201: SRPSSQKVLL
001: MAGIKVFGHP ASTATRRVLI ALHEKNVDFE FVHVELKDGE HKKEPFILRN PFGKVPAFED GDFKIFESRA ITQYIAHEFS DKGNNLLSTG KDMAIIAMGI
101: EIESHEFDPV GSKLVWEQVL KPLYGMTTDK TVVEEEEAKL AKVLDVYEHR LGESKYLASD HFTLVDLHTI PVIQYLLGTP TKKLFDERPH VSAWVADITS
201: RPSAQKVL
101: EIESHEFDPV GSKLVWEQVL KPLYGMTTDK TVVEEEEAKL AKVLDVYEHR LGESKYLASD HFTLVDLHTI PVIQYLLGTP TKKLFDERPH VSAWVADITS
201: RPSAQKVL
Arabidopsis Description
GSTF6Glutathione S-transferase F6 [Source:UniProtKB/Swiss-Prot;Acc:P42760]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.