Factsheet for VIT_07s0005g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g00010.t01
VIT_07s0005g00030.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02930.1	VIT_07s0005g00010.t01	AT1G02920.1	21798944
AT1G02930.1	VIT_07s0005g00030.t01	AT1G02920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g00030.t01	Wine grape	cytosol	93.93	93.93
Solyc06g009020.2.1	Tomato	plastid	66.82	67.14
KRH71552	Soybean	cytosol	68.22	66.97
PGSC0003DMT400037918	Potato	cytosol	66.36	66.67
PGSC0003DMT400029561	Potato	cytosol	65.42	65.42
Solyc09g074850.2.1	Tomato	cytosol	60.28	64.5
CDY18015	Canola	cytosol	62.62	62.91
CDX89931	Canola	cytosol, mitochondrion	61.68	62.86
CDY18131	Canola	cytosol, mitochondrion	61.68	62.86
Bra033358.1-P	Field mustard	cytosol, mitochondrion	61.68	62.86
Solyc06g009040.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	61.68	62.26
CDX80129	Canola	cytosol	62.62	62.04
CDY53015	Canola	cytosol	57.94	62.0
Bra004434.1-P	Field mustard	cytosol	57.94	62.0
CDX90933	Canola	cytosol	61.68	61.97
Bra000875.1-P	Field mustard	cytosol	61.68	61.97
Bra030515.1-P	Field mustard	cytosol, mitochondrion	60.75	61.9
CDY15444	Canola	cytosol, mitochondrion	60.75	61.9
CDX95731	Canola	cytosol	61.68	61.4
CDY50374	Canola	cytosol, mitochondrion	60.75	61.03
AT4G02520.1	Thale cress	cytosol, mitochondrion	60.28	60.85
CDY22058	Canola	cytosol, mitochondrion	60.28	60.56
Bra036259.1-P	Field mustard	cytosol, mitochondrion	60.28	60.56
Bra000460.1-P	Field mustard	cytosol	60.75	60.47
AT2G02930.1	Thale cress	cytosol, mitochondrion	59.81	60.38
CDY65569	Canola	cytosol, mitochondrion	59.81	60.09
Bra018543.1-P	Field mustard	cytosol, mitochondrion	59.81	60.09
AT1G02920.1	Thale cress	cytosol	58.41	59.81
CDX97273	Canola	cytosol, mitochondrion	59.35	59.62
CDX90934	Canola	cytosol, mitochondrion	58.88	59.15
Bra000876.1-P	Field mustard	cytosol, mitochondrion	58.88	59.15
CDY18016	Canola	cytosol, mitochondrion	58.88	59.15
Bra036260.1-P	Field mustard	cytosol, mitochondrion	58.41	58.69
AT1G02930.1	Thale cress	cytosol	57.01	58.65
CDY50375	Canola	cytosol, mitochondrion	56.54	56.81
AT2G47730.2	Thale cress	plastid	64.49	52.47
CDY71513	Canola	plastid	61.22	49.62
VIT_07s0104g01800.t01	Wine grape	cytosol	50.0	49.31
VIT_07s0104g01820.t01	Wine grape	cytosol	49.07	48.39
VIT_07s0104g01810.t01	Wine grape	cytosol	49.07	48.39
Bra032578.1-P	Field mustard	cytosol	53.74	47.33
CDY07846	Canola	cytosol	47.2	46.33
CDX89927	Canola	cytosol	54.21	45.85
CDY37454	Canola	cytosol, mitochondrion	53.74	45.82
CDY32486	Canola	cytosol, mitochondrion	53.74	45.82
Bra024517.1-P	Field mustard	cytosol	37.85	45.51
VIT_07s0104g01830.t01	Wine grape	cytosol	44.86	44.65
VIT_04s0079g00690.t01	Wine grape	mitochondrion	44.39	44.6
AT1G02950.5	Thale cress	cytosol	52.8	44.31
VIT_12s0028g00920.t01	Wine grape	cytosol	43.46	43.26
Bra033361.1-P	Field mustard	cytosol	37.38	42.78
VIT_12s0028g00930.t01	Wine grape	cytosol, endoplasmic reticulum	42.52	42.13
VIT_04s0079g00710.t01	Wine grape	cytosol	40.65	40.85
Bra033359.1-P	Field mustard	endoplasmic reticulum	47.2	40.73
VIT_18s0001g00690.t01	Wine grape	cytosol	39.72	38.12
AT1G02940.2	Thale cress	endoplasmic reticulum	47.2	35.94
CDY18136	Canola	cytosol	54.21	34.83
CDY07850	Canola	cytosol, plastid	54.21	34.83
Bra033360.1-P	Field mustard	endoplasmic reticulum	3.27	3.55
CDX89928	Canola	endoplasmic reticulum	3.27	2.89

Protein Annotations

KEGG:00480+2.5.1.18	KEGG:00980+2.5.1.18	KEGG:00982+2.5.1.18	KEGG:00983+2.5.1.18	Gene3D:1.20.1050.10	EntrezGene:100243577
wikigene:100243577	MapMan:18.8.1.5	Gene3D:3.40.30.10	ProteinID:AAN85827	ProteinID:AAN85827.1	EMBL:AY156049
ProteinID:CBI36818	ProteinID:CBI36818.3	UniProt:D7U252	EMBL:FN596502	GO:GO:0003674	GO:GO:0003824
GO:GO:0004364	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006749	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
InterPro:GST_C	InterPro:GST_Phi_C	InterPro:Glutathione-S-Trfase_C-like	InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045
InterPro:IPR010987	EntrezGene:LOC100243577	wikigene:LOC100243577	PFAM:PF00043	PFAM:PF02798	PFscan:PS50404
PFscan:PS50405	PANTHER:PTHR43900	PANTHER:PTHR43900:SF7	SUPFAM:SSF47616	SUPFAM:SSF52833	TIGR:TC62549
TIGR:TC68554	InterPro:Thioredoxin-like_sf	UniParc:UPI00015CAA32	ArrayExpress:VIT_07s0005g00010	EnsemblPlantsGene:VIT_07s0005g00010	EnsemblPlants:VIT_07s0005g00010.t01
unigene:Vvi.24481	RefSeq:XP_002262604	RefSeq:XP_002262604.1	:	:	:

Description

No Description!

Coordinates

chr7:+:2837381..2838789

Molecular Weight (calculated)

23626.7 Da

IEP (calculated)

6.789

GRAVY (calculated)

0.027

Length

214 amino acids

Sequence
(BLAST)

001: MAVLKVHGSP FSTATMRVVS ALYEKGLQFE FVSIDMKVGQ HKSEAFLALN PFGQVPAFED GDLKLFESRA ITQYIAHEYA SNGTQLICPD SKKMAIMSVW
101: MEVEAHQYDP HAAKLCFELC IKPMLGLTTD PAAVEDLEAK LGKVLDVYEA RLTQSKYLGG DCLGLADLHH LPTLHYLLGS SAKKLFDSRP HVSAWVADIT
201: ARPAWAKVIA MQKS

Best Arabidopsis Sequence Match ( AT2G47730.1 )
(BLAST)

001: MGAIQARLPL FLSPPSIKHH TFLHSSSSNS NFKIRSNKSS SSSSSSIIMA SIKVHGVPMS TATMRVLATL YEKDLQFELI PVDMRAGAHK QEAHLALNPF
101: GQIPALEDGD LTLFESRAIT QYLAEEYSEK GEKLISQDCK KVKATTNVWL QVEGQQFDPN ASKLAFERVF KGMFGMTTDP AAVQELEGKL QKVLDVYEAR
201: LAKSEFLAGD SFTLADLHHL PAIHYLLGTD SKVLFDSRPK VSEWIKKISA RPAWAKVIDL QKQ

Arabidopsis Description

GSTF8Glutathione S-transferase F8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96266]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.