Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g009020.2.1 | |
| Solyc06g009040.2.1 | |
| Solyc09g074850.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G02930.1 | Solyc06g009020.2.1 | AT1G02920.1 | 21798944 |
| AT1G02930.1 | Solyc06g009040.2.1 | AT1G02920.1 | 21798944 |
| AT1G02930.1 | Solyc09g074850.2.1 | AT1G02920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029561 | Potato | cytosol | 93.0 | 86.92 |
| Solyc06g009020.2.1 | Tomato | plastid | 66.0 | 61.97 |
| VIT_07s0005g00010.t01 | Wine grape | cytosol | 64.5 | 60.28 |
| Solyc06g009040.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 63.5 | 59.91 |
| VIT_07s0005g00030.t01 | Wine grape | cytosol | 62.0 | 57.94 |
| Bra004434.1-P | Field mustard | cytosol | 56.5 | 56.5 |
| CDY53015 | Canola | cytosol | 56.0 | 56.0 |
| KRH71552 | Soybean | cytosol | 59.0 | 54.13 |
| Bra030515.1-P | Field mustard | cytosol, mitochondrion | 56.5 | 53.81 |
| CDY15444 | Canola | cytosol, mitochondrion | 56.5 | 53.81 |
| CDY18131 | Canola | cytosol, mitochondrion | 56.0 | 53.33 |
| CDY50374 | Canola | cytosol, mitochondrion | 56.5 | 53.05 |
| CDY22058 | Canola | cytosol, mitochondrion | 56.5 | 53.05 |
| CDY18015 | Canola | cytosol | 56.5 | 53.05 |
| Bra033358.1-P | Field mustard | cytosol, mitochondrion | 55.5 | 52.86 |
| CDX89931 | Canola | cytosol, mitochondrion | 55.5 | 52.86 |
| AT2G02930.1 | Thale cress | cytosol, mitochondrion | 56.0 | 52.83 |
| Bra000875.1-P | Field mustard | cytosol | 56.0 | 52.58 |
| Bra036259.1-P | Field mustard | cytosol, mitochondrion | 56.0 | 52.58 |
| CDX90933 | Canola | cytosol | 56.0 | 52.58 |
| CDX80129 | Canola | cytosol | 56.5 | 52.31 |
| CDY65569 | Canola | cytosol, mitochondrion | 55.5 | 52.11 |
| Bra018543.1-P | Field mustard | cytosol, mitochondrion | 55.5 | 52.11 |
| Bra036260.1-P | Field mustard | cytosol, mitochondrion | 55.5 | 52.11 |
| CDX97273 | Canola | cytosol, mitochondrion | 55.5 | 52.11 |
| CDX90934 | Canola | cytosol, mitochondrion | 55.0 | 51.64 |
| Bra000876.1-P | Field mustard | cytosol, mitochondrion | 55.0 | 51.64 |
| AT4G02520.1 | Thale cress | cytosol, mitochondrion | 54.5 | 51.42 |
| CDY18016 | Canola | cytosol, mitochondrion | 54.5 | 51.17 |
| AT1G02920.1 | Thale cress | cytosol | 53.0 | 50.72 |
| AT1G02930.1 | Thale cress | cytosol | 52.5 | 50.48 |
| CDY50375 | Canola | cytosol, mitochondrion | 53.5 | 50.23 |
| CDX95731 | Canola | cytosol | 53.0 | 49.3 |
| Bra000460.1-P | Field mustard | cytosol | 52.5 | 48.84 |
| Bra024517.1-P | Field mustard | cytosol | 41.0 | 46.07 |
| Bra033361.1-P | Field mustard | cytosol | 40.5 | 43.32 |
| CDY07846 | Canola | cytosol | 47.0 | 43.12 |
| AT1G02950.5 | Thale cress | cytosol | 54.5 | 42.75 |
| AT2G47730.2 | Thale cress | plastid | 56.0 | 42.59 |
| Bra032578.1-P | Field mustard | cytosol | 51.5 | 42.39 |
| CDX89927 | Canola | cytosol | 53.5 | 42.29 |
| CDY37454 | Canola | cytosol, mitochondrion | 52.0 | 41.43 |
| CDY32486 | Canola | cytosol, mitochondrion | 51.5 | 41.04 |
| CDY71513 | Canola | plastid | 53.5 | 40.53 |
| Bra033359.1-P | Field mustard | endoplasmic reticulum | 50.0 | 40.32 |
| Solyc12g094430.1.1 | Tomato | plastid | 43.5 | 39.37 |
| Solyc02g081340.2.1 | Tomato | cytosol, endoplasmic reticulum | 39.0 | 33.91 |
| AT1G02940.2 | Thale cress | endoplasmic reticulum | 47.0 | 33.45 |
| CDY18136 | Canola | cytosol | 53.0 | 31.83 |
| CDY07850 | Canola | cytosol, plastid | 51.5 | 30.93 |
| Bra033360.1-P | Field mustard | endoplasmic reticulum | 3.0 | 3.05 |
| CDX89928 | Canola | endoplasmic reticulum | 3.0 | 2.48 |
Protein Annotations
| KEGG:00480+2.5.1.18 | KEGG:00980+2.5.1.18 | KEGG:00982+2.5.1.18 | KEGG:00983+2.5.1.18 | Gene3D:1.20.1050.10 | MapMan:18.8.1.5 |
| Gene3D:3.40.30.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004364 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006749 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | InterPro:GST_C | InterPro:GST_Phi_C | InterPro:Glutathione-S-Trfase_C-like |
| InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N | InterPro:IPR004045 | InterPro:IPR010987 | UniProt:K4CV62 | PFAM:PF00043 |
| PFAM:PF02798 | PFscan:PS50404 | PFscan:PS50405 | PANTHER:PTHR43900 | PANTHER:PTHR43900:SF7 | SUPFAM:SSF47616 |
| SUPFAM:SSF52833 | EnsemblPlantsGene:Solyc09g074850.2 | EnsemblPlants:Solyc09g074850.2.1 | InterPro:Thioredoxin-like_sf | UniParc:UPI000276B769 | : |
Description
No Description!
Coordinates
chr9:+:66668672..66671087
Molecular Weight (calculated)
22951.0 Da
IEP (calculated)
5.345
GRAVY (calculated)
-0.093
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MRVISCLIEK DLDFEFVFVD MAKEEHKRHP FLSLNPFAQV PAFEDGDLKL FESRAITQYI AQVYASNGIQ LILQDPMKMA IMSVWMEVEG QKFEPPASKL
101: TWELVIKPMI GLGSTDDVIV KESEEQLSKV LDIYETRLTE SKYLGGDSFT LVDLHHIPNI YHLMNTKAKA LFDSRPRVSV WCADILARPA WVKGLEKMQK
101: TWELVIKPMI GLGSTDDVIV KESEEQLSKV LDIYETRLTE SKYLGGDSFT LVDLHHIPNI YHLMNTKAKA LFDSRPRVSV WCADILARPA WVKGLEKMQK
001: MGAIQARLPL FLSPPSIKHH TFLHSSSSNS NFKIRSNKSS SSSSSSIIMA SIKVHGVPMS TATMRVLATL YEKDLQFELI PVDMRAGAHK QEAHLALNPF
101: GQIPALEDGD LTLFESRAIT QYLAEEYSEK GEKLISQDCK KVKATTNVWL QVEGQQFDPN ASKLAFERVF KGMFGMTTDP AAVQELEGKL QKVLDVYEAR
201: LAKSEFLAGD SFTLADLHHL PAIHYLLGTD SKVLFDSRPK VSEWIKKISA RPAWAKVIDL QKQ
101: GQIPALEDGD LTLFESRAIT QYLAEEYSEK GEKLISQDCK KVKATTNVWL QVEGQQFDPN ASKLAFERVF KGMFGMTTDP AAVQELEGKL QKVLDVYEAR
201: LAKSEFLAGD SFTLADLHHL PAIHYLLGTD SKVLFDSRPK VSEWIKKISA RPAWAKVIDL QKQ
Arabidopsis Description
GSTF8Glutathione S-transferase F8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96266]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.