Factsheet for Solyc12g094430.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
plastid 3
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075626	Potato	cytosol	97.74	97.74
VIT_18s0001g00690.t01	Wine grape	cytosol	76.92	76.23
GSMUA_Achr5P17880_001	Banana	cytosol	64.71	64.71
GSMUA_Achr2P11180_001	Banana	cytosol	64.25	63.96
Os03t0135300-01	Rice	plastid	59.73	58.93
EER92907	Sorghum	cytosol, plastid	58.82	58.04
TraesCS4B01G331100.1	Wheat	endoplasmic reticulum, peroxisome	59.28	57.96
TraesCS4D01G328000.1	Wheat	peroxisome	59.28	57.96
TraesCS5A01G502500.1	Wheat	endoplasmic reticulum, peroxisome	59.28	57.96
Zm00001d027542_P001	Maize	endoplasmic reticulum	59.28	54.81
HORVU4Hr1G081100.1	Barley	endoplasmic reticulum	60.18	52.78
Solyc06g009040.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.34	46.23
Solyc06g009020.2.1	Tomato	plastid	42.99	44.6
Solyc09g074850.2.1	Tomato	cytosol	39.37	43.5
Solyc02g081340.2.1	Tomato	cytosol, endoplasmic reticulum	41.18	39.57

Protein Annotations

KEGG:00480+2.5.1.18	KEGG:00980+2.5.1.18	KEGG:00982+2.5.1.18	KEGG:00983+2.5.1.18	Gene3D:1.20.1050.10	MapMan:18.8.1.5
Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	InterPro:GST_C	InterPro:GST_Phi_C	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	UniProt:K4DH15	PFAM:PF00043
PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR43900	SUPFAM:SSF47616	SUPFAM:SSF52833
EnsemblPlantsGene:Solyc12g094430.1	EnsemblPlants:Solyc12g094430.1.1	InterPro:Thioredoxin-like_sf	UniParc:UPI0002769747	:	:

Description

No Description!

Coordinates

chr12:+:64641339..64643494

Molecular Weight (calculated)

25076.9 Da

IEP (calculated)

7.496

GRAVY (calculated)

-0.512

Length

221 amino acids

Sequence
(BLAST)

001: MATPVKVYGP TLSTAVSRVL ACLLEKNVQF HLIPVNMAKG EHKKPAYLKI QPFGQVPAYQ DEDITLFESR SINRYICDKY GSQGNKGLYG TNPLEKASID
101: QWIEAEGQSF NPPSSVLVFQ LAFAPRMKLK QDENLIRQNE EKLKKVLDVY EKRLGDSQYL AGDEFTLADL SHLPNIQYLV NGTDRAELIT SRENVGRWWG
201: EISNRESWKK VVEMQTSPPP S

Best Arabidopsis Sequence Match ( AT2G47730.1 )
(BLAST)

001: MGAIQARLPL FLSPPSIKHH TFLHSSSSNS NFKIRSNKSS SSSSSSIIMA SIKVHGVPMS TATMRVLATL YEKDLQFELI PVDMRAGAHK QEAHLALNPF
101: GQIPALEDGD LTLFESRAIT QYLAEEYSEK GEKLISQDCK KVKATTNVWL QVEGQQFDPN ASKLAFERVF KGMFGMTTDP AAVQELEGKL QKVLDVYEAR
201: LAKSEFLAGD SFTLADLHHL PAIHYLLGTD SKVLFDSRPK VSEWIKKISA RPAWAKVIDL QKQ

Arabidopsis Description

GSTF8Glutathione S-transferase F8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96266]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.