Factsheet for Solyc06g009040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g009020.2.1
Solyc06g009040.2.1
Solyc09g074850.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02930.1	Solyc06g009020.2.1	AT1G02920.1	21798944
AT1G02930.1	Solyc06g009040.2.1	AT1G02920.1	21798944
AT1G02930.1	Solyc09g074850.2.1	AT1G02920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009020.2.1	Tomato	plastid	83.49	83.1
PGSC0003DMT400037918	Potato	cytosol	83.49	83.1
Solyc09g074850.2.1	Tomato	cytosol	59.91	63.5
VIT_07s0005g00030.t01	Wine grape	cytosol	62.74	62.15
VIT_07s0005g00010.t01	Wine grape	cytosol	62.26	61.68
AT2G02930.1	Thale cress	cytosol, mitochondrion	60.38	60.38
CDY65569	Canola	cytosol, mitochondrion	60.38	60.09
CDY22058	Canola	cytosol, mitochondrion	60.38	60.09
Bra018543.1-P	Field mustard	cytosol, mitochondrion	60.38	60.09
CDY18015	Canola	cytosol	59.91	59.62
CDX97273	Canola	cytosol, mitochondrion	59.91	59.62
Bra036259.1-P	Field mustard	cytosol, mitochondrion	59.91	59.62
AT1G02930.1	Thale cress	cytosol	58.49	59.62
Bra030515.1-P	Field mustard	cytosol, mitochondrion	58.96	59.52
CDY15444	Canola	cytosol, mitochondrion	58.96	59.52
AT1G02920.1	Thale cress	cytosol	58.49	59.33
CDY50374	Canola	cytosol, mitochondrion	59.43	59.15
Bra000875.1-P	Field mustard	cytosol	59.43	59.15
CDX90934	Canola	cytosol, mitochondrion	59.43	59.15
CDX90933	Canola	cytosol	59.43	59.15
CDY18131	Canola	cytosol, mitochondrion	58.49	59.05
AT4G02520.1	Thale cress	cytosol, mitochondrion	58.96	58.96
CDY18016	Canola	cytosol, mitochondrion	58.96	58.69
Bra033358.1-P	Field mustard	cytosol, mitochondrion	58.02	58.57
CDX89931	Canola	cytosol, mitochondrion	58.02	58.57
Bra000876.1-P	Field mustard	cytosol, mitochondrion	58.49	58.22
KRH71552	Soybean	cytosol	59.43	57.8
Bra036260.1-P	Field mustard	cytosol, mitochondrion	58.02	57.75
Bra004434.1-P	Field mustard	cytosol	53.3	56.5
CDY53015	Canola	cytosol	53.3	56.5
CDX80129	Canola	cytosol	56.6	55.56
CDY50375	Canola	cytosol, mitochondrion	55.66	55.4
CDX95731	Canola	cytosol	55.19	54.42
Bra000460.1-P	Field mustard	cytosol	54.72	53.95
AT2G47730.2	Thale cress	plastid	57.08	46.01
Solyc12g094430.1.1	Tomato	plastid	46.23	44.34
CDY71513	Canola	plastid	55.19	44.32
Bra032578.1-P	Field mustard	cytosol	49.06	42.8
CDY07846	Canola	cytosol	43.87	42.66
Bra024517.1-P	Field mustard	cytosol	34.91	41.57
AT1G02950.5	Thale cress	cytosol	50.0	41.57
CDY37454	Canola	cytosol, mitochondrion	49.06	41.43
CDY32486	Canola	cytosol, mitochondrion	49.06	41.43
CDX89927	Canola	cytosol	49.06	41.11
Bra033359.1-P	Field mustard	endoplasmic reticulum	46.7	39.92
Bra033361.1-P	Field mustard	cytosol	33.96	38.5
Solyc02g081340.2.1	Tomato	cytosol, endoplasmic reticulum	39.62	36.52
AT1G02940.2	Thale cress	endoplasmic reticulum	46.7	35.23
CDY18136	Canola	cytosol	49.53	31.53
CDY07850	Canola	cytosol, plastid	48.11	30.63
Bra033360.1-P	Field mustard	endoplasmic reticulum	2.83	3.05
CDX89928	Canola	endoplasmic reticulum	2.83	2.48

Protein Annotations

KEGG:00480+2.5.1.18	KEGG:00980+2.5.1.18	KEGG:00982+2.5.1.18	KEGG:00983+2.5.1.18	Gene3D:1.20.1050.10	MapMan:18.8.1.5
Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	InterPro:GST_C	InterPro:GST_Phi_C	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	UniProt:K4C3T4	PFAM:PF00043
PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR43900	PANTHER:PTHR43900:SF7	SUPFAM:SSF47616
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc06g009040.2	EnsemblPlants:Solyc06g009040.2.1	InterPro:Thioredoxin-like_sf	UniParc:UPI0002766B08	:

Description

No Description!

Coordinates

chr6:+:2975638..2977590

Molecular Weight (calculated)

23864.1 Da

IEP (calculated)

6.519

GRAVY (calculated)

-0.093

Length

212 amino acids

Sequence
(BLAST)

001: MAIKVHGPML SPAVVRVVAM LKEKNLDFEL VHVDLQNGDQ KKEPFISLNP FGQVPAFEDG DLKLFESRAI TQYIAHTYAD KGNQLLPNDP KKMAIMYVWI
101: EVEAQRFEPV VSKLCYEIVI KPLLDMVTDD AIVAENEEKL SKLLDVYESR LKDSKYLGGD SFTLADLNHA PALHYLMGTK VKSLFNARPH VGAWVANILA
201: RPAWAKSLEL TK

Best Arabidopsis Sequence Match ( AT4G02520.1 )
(BLAST)

001: MAGIKVFGHP ASIATRRVLI ALHEKNLDFE LVHVELKDGE HKKEPFLSRN PFGQVPAFED GDLKLFESRA ITQYIAHRYE NQGTNLLQTD SKNISQYAIM
101: AIGMQVEDHQ FDPVASKLAF EQIFKSIYGL TTDEAVVAEE EAKLAKVLDV YEARLKEFKY LAGETFTLTD LHHIPAIQYL LGTPTKKLFT ERPRVNEWVA
201: EITKRPASEK VQ

Arabidopsis Description

GSTF2Glutathione S-transferase F2 [Source:UniProtKB/Swiss-Prot;Acc:P46422]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.