Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 2
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_07s0005g00010.t01 | |
| VIT_07s0005g00030.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G02930.1 | VIT_07s0005g00010.t01 | AT1G02920.1 | 21798944 |
| AT1G02930.1 | VIT_07s0005g00030.t01 | AT1G02920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0005g00010.t01 | Wine grape | cytosol | 93.93 | 93.93 |
| KRH71552 | Soybean | cytosol | 67.76 | 66.51 |
| Solyc06g009020.2.1 | Tomato | plastid | 65.89 | 66.2 |
| PGSC0003DMT400037918 | Potato | cytosol | 64.95 | 65.26 |
| CDX95731 | Canola | cytosol | 63.55 | 63.26 |
| PGSC0003DMT400029561 | Potato | cytosol | 63.08 | 63.08 |
| Bra033358.1-P | Field mustard | cytosol, mitochondrion | 61.68 | 62.86 |
| CDX89931 | Canola | cytosol, mitochondrion | 61.68 | 62.86 |
| Solyc06g009040.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 62.15 | 62.74 |
| CDY18131 | Canola | cytosol, mitochondrion | 61.22 | 62.38 |
| Bra000460.1-P | Field mustard | cytosol | 62.62 | 62.33 |
| Bra004434.1-P | Field mustard | cytosol | 57.94 | 62.0 |
| Solyc09g074850.2.1 | Tomato | cytosol | 57.94 | 62.0 |
| CDY53015 | Canola | cytosol | 57.94 | 62.0 |
| CDX80129 | Canola | cytosol | 62.15 | 61.57 |
| CDY18015 | Canola | cytosol | 60.75 | 61.03 |
| CDY15444 | Canola | cytosol, mitochondrion | 59.35 | 60.48 |
| Bra030515.1-P | Field mustard | cytosol, mitochondrion | 59.35 | 60.48 |
| CDX90933 | Canola | cytosol | 59.81 | 60.09 |
| Bra000875.1-P | Field mustard | cytosol | 59.81 | 60.09 |
| AT2G02930.1 | Thale cress | cytosol, mitochondrion | 58.88 | 59.43 |
| AT1G02920.1 | Thale cress | cytosol | 57.94 | 59.33 |
| CDY65569 | Canola | cytosol, mitochondrion | 58.41 | 58.69 |
| CDY50374 | Canola | cytosol, mitochondrion | 58.41 | 58.69 |
| Bra018543.1-P | Field mustard | cytosol, mitochondrion | 58.41 | 58.69 |
| AT4G02520.1 | Thale cress | cytosol, mitochondrion | 57.94 | 58.49 |
| Bra036259.1-P | Field mustard | cytosol, mitochondrion | 57.94 | 58.22 |
| CDY22058 | Canola | cytosol, mitochondrion | 57.94 | 58.22 |
| CDX97273 | Canola | cytosol, mitochondrion | 57.94 | 58.22 |
| AT1G02930.1 | Thale cress | cytosol | 56.54 | 58.17 |
| CDX90934 | Canola | cytosol, mitochondrion | 57.01 | 57.28 |
| CDY18016 | Canola | cytosol, mitochondrion | 57.01 | 57.28 |
| Bra000876.1-P | Field mustard | cytosol, mitochondrion | 57.01 | 57.28 |
| Bra036260.1-P | Field mustard | cytosol, mitochondrion | 56.54 | 56.81 |
| CDY50375 | Canola | cytosol, mitochondrion | 54.67 | 54.93 |
| AT2G47730.2 | Thale cress | plastid | 64.95 | 52.85 |
| CDY71513 | Canola | plastid | 62.62 | 50.76 |
| VIT_07s0104g01800.t01 | Wine grape | cytosol | 50.93 | 50.23 |
| VIT_07s0104g01810.t01 | Wine grape | cytosol | 50.0 | 49.31 |
| VIT_07s0104g01820.t01 | Wine grape | cytosol | 49.07 | 48.39 |
| Bra032578.1-P | Field mustard | cytosol | 52.8 | 46.5 |
| VIT_07s0104g01830.t01 | Wine grape | cytosol | 45.79 | 45.58 |
| CDY32486 | Canola | cytosol, mitochondrion | 52.8 | 45.02 |
| CDY37454 | Canola | cytosol, mitochondrion | 52.8 | 45.02 |
| CDY07846 | Canola | cytosol | 45.33 | 44.5 |
| CDX89927 | Canola | cytosol | 52.34 | 44.27 |
| VIT_04s0079g00690.t01 | Wine grape | mitochondrion | 43.93 | 44.13 |
| VIT_12s0028g00920.t01 | Wine grape | cytosol | 43.93 | 43.72 |
| Bra024517.1-P | Field mustard | cytosol | 35.98 | 43.26 |
| AT1G02950.5 | Thale cress | cytosol | 51.4 | 43.14 |
| VIT_12s0028g00930.t01 | Wine grape | cytosol, endoplasmic reticulum | 42.99 | 42.59 |
| Bra033361.1-P | Field mustard | cytosol | 35.98 | 41.18 |
| VIT_04s0079g00710.t01 | Wine grape | cytosol | 40.19 | 40.38 |
| Bra033359.1-P | Field mustard | endoplasmic reticulum | 44.86 | 38.71 |
| VIT_18s0001g00690.t01 | Wine grape | cytosol | 39.25 | 37.67 |
| AT1G02940.2 | Thale cress | endoplasmic reticulum | 45.79 | 34.88 |
| CDY18136 | Canola | cytosol | 52.34 | 33.63 |
| CDY07850 | Canola | cytosol, plastid | 52.34 | 33.63 |
| Bra033360.1-P | Field mustard | endoplasmic reticulum | 2.34 | 2.54 |
| CDX89928 | Canola | endoplasmic reticulum | 2.34 | 2.07 |
Protein Annotations
| KEGG:00480+2.5.1.18 | KEGG:00980+2.5.1.18 | KEGG:00982+2.5.1.18 | KEGG:00983+2.5.1.18 | Gene3D:1.20.1050.10 | EntrezGene:100265903 |
| wikigene:100265903 | MapMan:18.8.1.5 | Gene3D:3.40.30.10 | ProteinID:AAN85827 | ProteinID:AAN85827.1 | ProteinID:ABK81651 |
| ProteinID:ABK81651.1 | EMBL:AY156049 | ProteinID:CCB59942 | ProteinID:CCB59942.1 | EMBL:EF088687 | UniProt:F6HZ27 |
| EMBL:FN596502 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004364 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006749 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016740 | InterPro:GST_C | InterPro:GST_Phi_C | InterPro:Glutathione-S-Trfase_C-like |
| InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N | InterPro:IPR004045 | InterPro:IPR010987 | EntrezGene:LOC100265903 | wikigene:LOC100265903 |
| PFAM:PF00043 | PFAM:PF02798 | PFscan:PS50404 | PFscan:PS50405 | PANTHER:PTHR43900 | PANTHER:PTHR43900:SF7 |
| SUPFAM:SSF47616 | SUPFAM:SSF52833 | TIGR:TC57357 | InterPro:Thioredoxin-like_sf | UniParc:UPI00015CAA35 | ArrayExpress:VIT_07s0005g00030 |
| EnsemblPlantsGene:VIT_07s0005g00030 | EnsemblPlants:VIT_07s0005g00030.t01 | unigene:Vvi.1568 | unigene:Vvi.25300 | RefSeq:XP_002262842 | RefSeq:XP_002262842.1 |
Description
No Description!
Coordinates
chr7:-:2846630..2848018
Molecular Weight (calculated)
23822.7 Da
IEP (calculated)
6.417
GRAVY (calculated)
-0.033
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLKVHGSP FSTAVMRVVA ALYEKELEFE FVTIDMKAGQ HKSEAFLALN PFGQIPAFED GDLKLFESRA ITQYIAHEYA SNGTQLICPD SKKMAIMSVW
101: IEVEAHQYDP HAAKLCYELF YKPMFGQTTD PAAVEDLEAK LGKVLDVYEA RLTQSKYLGG DCLGLADLHH LPTLHYLLGS SAKKLFDSRP HVSAWVADIT
201: ARPAWAKVIA MQKS
101: IEVEAHQYDP HAAKLCYELF YKPMFGQTTD PAAVEDLEAK LGKVLDVYEA RLTQSKYLGG DCLGLADLHH LPTLHYLLGS SAKKLFDSRP HVSAWVADIT
201: ARPAWAKVIA MQKS
001: MGAIQARLPL FLSPPSIKHH TFLHSSSSNS NFKIRSNKSS SSSSSSIIMA SIKVHGVPMS TATMRVLATL YEKDLQFELI PVDMRAGAHK QEAHLALNPF
101: GQIPALEDGD LTLFESRAIT QYLAEEYSEK GEKLISQDCK KVKATTNVWL QVEGQQFDPN ASKLAFERVF KGMFGMTTDP AAVQELEGKL QKVLDVYEAR
201: LAKSEFLAGD SFTLADLHHL PAIHYLLGTD SKVLFDSRPK VSEWIKKISA RPAWAKVIDL QKQ
101: GQIPALEDGD LTLFESRAIT QYLAEEYSEK GEKLISQDCK KVKATTNVWL QVEGQQFDPN ASKLAFERVF KGMFGMTTDP AAVQELEGKL QKVLDVYEAR
201: LAKSEFLAGD SFTLADLHHL PAIHYLLGTD SKVLFDSRPK VSEWIKKISA RPAWAKVIDL QKQ
Arabidopsis Description
GSTF8Glutathione S-transferase F8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96266]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.