Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G02930.1 | CDX89931 | AT1G02920.1 | 21798944 |
AT1G02930.1 | CDY15444 | AT1G02920.1 | 21798944 |
AT1G02930.1 | CDY18131 | AT1G02920.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra030515.1-P | Field mustard | cytosol, mitochondrion | 100.0 | 100.0 |
CDY18131 | Canola | cytosol, mitochondrion | 97.14 | 97.14 |
CDX89931 | Canola | cytosol, mitochondrion | 96.19 | 96.19 |
AT1G02930.1 | Thale cress | cytosol | 82.86 | 83.65 |
AT1G02920.1 | Thale cress | cytosol | 81.9 | 82.3 |
CDY65569 | Canola | cytosol, mitochondrion | 80.0 | 78.87 |
CDX97273 | Canola | cytosol, mitochondrion | 79.52 | 78.4 |
CDY50374 | Canola | cytosol, mitochondrion | 77.14 | 76.06 |
CDY18016 | Canola | cytosol, mitochondrion | 75.71 | 74.65 |
CDY22058 | Canola | cytosol, mitochondrion | 75.71 | 74.65 |
CDX90934 | Canola | cytosol, mitochondrion | 75.71 | 74.65 |
CDX90933 | Canola | cytosol | 72.38 | 71.36 |
CDY50375 | Canola | cytosol, mitochondrion | 72.38 | 71.36 |
CDY18015 | Canola | cytosol | 72.38 | 71.36 |
Solyc06g009020.2.1 | Tomato | plastid | 61.9 | 61.03 |
VIT_07s0005g00010.t01 | Wine grape | cytosol | 61.9 | 60.75 |
PGSC0003DMT400037918 | Potato | cytosol | 61.43 | 60.56 |
VIT_07s0005g00030.t01 | Wine grape | cytosol | 60.48 | 59.35 |
Solyc06g009040.2.1 | Tomato | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 59.52 | 58.96 |
PGSC0003DMT400029561 | Potato | cytosol | 60.0 | 58.88 |
Solyc09g074850.2.1 | Tomato | cytosol | 53.81 | 56.5 |
CDX80129 | Canola | cytosol | 57.62 | 56.02 |
CDX95731 | Canola | cytosol | 56.67 | 55.35 |
CDY53015 | Canola | cytosol | 51.9 | 54.5 |
CDY07846 | Canola | cytosol | 55.71 | 53.67 |
CDY37454 | Canola | cytosol, mitochondrion | 59.05 | 49.4 |
CDX89927 | Canola | cytosol | 59.05 | 49.01 |
CDY32486 | Canola | cytosol, mitochondrion | 58.1 | 48.61 |
CDY71513 | Canola | plastid | 58.1 | 46.21 |
CDX89147 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 46.19 | 44.29 |
CDX93963 | Canola | cytosol | 45.71 | 43.84 |
CDY43144 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plastid | 41.43 | 41.43 |
CDY28744 | Canola | cytosol, endoplasmic reticulum, mitochondrion, plastid | 40.48 | 40.48 |
CDY29636 | Canola | cytosol | 40.95 | 40.0 |
CDX97788 | Canola | cytosol | 40.95 | 40.0 |
CDY37204 | Canola | cytosol | 47.62 | 39.37 |
CDY23980 | Canola | cytosol | 40.0 | 39.07 |
CDX84816 | Canola | cytosol | 40.0 | 39.07 |
CDX85469 | Canola | cytosol, mitochondrion | 40.0 | 39.07 |
CDY16947 | Canola | cytosol | 39.52 | 38.97 |
CDX69395 | Canola | cytosol | 39.52 | 38.97 |
CDY02726 | Canola | cytosol | 38.57 | 37.85 |
CDY07850 | Canola | cytosol, plastid | 59.05 | 37.24 |
CDY18136 | Canola | cytosol | 58.57 | 36.94 |
CDX84815 | Canola | cytosol, endoplasmic reticulum | 35.71 | 34.88 |
CDY23979 | Canola | endoplasmic reticulum | 35.24 | 34.42 |
CDY02724 | Canola | cytosol, endoplasmic reticulum, plasma membrane, plastid | 39.05 | 23.98 |
CDX89928 | Canola | endoplasmic reticulum | 2.38 | 2.07 |
CDY18134 | Canola | nucleus | 0.0 | 0.0 |
Protein Annotations
KEGG:00480+2.5.1.18 | KEGG:00980+2.5.1.18 | KEGG:00982+2.5.1.18 | KEGG:00983+2.5.1.18 | Gene3D:1.20.1050.10 | MapMan:18.8.1.5 |
Gene3D:3.40.30.10 | UniProt:A0A078FRC5 | EnsemblPlants:CDY15444 | ProteinID:CDY15444 | ProteinID:CDY15444.1 | GO:GO:0003674 |
GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00089611001 | InterPro:GST_C | InterPro:GST_Phi_C | InterPro:Glutathione-S-Trfase_C-like |
InterPro:Glutathione-S-Trfase_C_sf | InterPro:Glutathione_S-Trfase_N | InterPro:IPR004045 | InterPro:IPR010987 | PFAM:PF00043 | PFAM:PF02798 |
PFscan:PS50404 | PFscan:PS50405 | PANTHER:PTHR43900 | PANTHER:PTHR43900:SF7 | SUPFAM:SSF47616 | SUPFAM:SSF52833 |
InterPro:Thioredoxin-like_sf | UniParc:UPI0002545AA8 | SEG:seg | : | : | : |
Description
BnaA08g27280DBnaA08g27280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRC5]
Coordinates
chrLK032055:-:64555..65503
Molecular Weight (calculated)
23692.4 Da
IEP (calculated)
6.350
GRAVY (calculated)
-0.262
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGIKVFGHP ASTATRRVLI ALHEKDLDFE LVHVELKDGE HKKEPFLSRN PFGKVPAFED GDFKLFESRA ITQYIAHEYA DKGNQLLSPG SKNMAILAMG
101: MEIEAHEFDS VASKLGWEQI FKNFFGLTTD QAVVKEEEVK LGKVLDNYEA RLGESKYLAS DHFTLVDLHH IPVIQYLLGT PTKKLFEERP HVSAWVADIT
201: SRPSSQKILL
101: MEIEAHEFDS VASKLGWEQI FKNFFGLTTD QAVVKEEEVK LGKVLDNYEA RLGESKYLAS DHFTLVDLHH IPVIQYLLGT PTKKLFEERP HVSAWVADIT
201: SRPSSQKILL
001: MAGIKVFGHP ASTATRRVLI ALHEKNVDFE FVHVELKDGE HKKEPFILRN PFGKVPAFED GDFKIFESRA ITQYIAHEFS DKGNNLLSTG KDMAIIAMGI
101: EIESHEFDPV GSKLVWEQVL KPLYGMTTDK TVVEEEEAKL AKVLDVYEHR LGESKYLASD HFTLVDLHTI PVIQYLLGTP TKKLFDERPH VSAWVADITS
201: RPSAQKVL
101: EIESHEFDPV GSKLVWEQVL KPLYGMTTDK TVVEEEEAKL AKVLDVYEHR LGESKYLASD HFTLVDLHTI PVIQYLLGTP TKKLFDERPH VSAWVADITS
201: RPSAQKVL
Arabidopsis Description
GSTF6Glutathione S-transferase F6 [Source:UniProtKB/Swiss-Prot;Acc:P42760]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.