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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, cytosol

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 3
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89931
CDY15444
CDY18131

Inferred from Arabidopsis experimental PPI

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030515.1-P Field mustard cytosol, mitochondrion 100.0 100.0
CDY18131 Canola cytosol, mitochondrion 97.14 97.14
CDX89931 Canola cytosol, mitochondrion 96.19 96.19
AT1G02930.1 Thale cress cytosol 82.86 83.65
AT1G02920.1 Thale cress cytosol 81.9 82.3
CDY65569 Canola cytosol, mitochondrion 80.0 78.87
CDX97273 Canola cytosol, mitochondrion 79.52 78.4
CDY50374 Canola cytosol, mitochondrion 77.14 76.06
CDY18016 Canola cytosol, mitochondrion 75.71 74.65
CDY22058 Canola cytosol, mitochondrion 75.71 74.65
CDX90934 Canola cytosol, mitochondrion 75.71 74.65
CDX90933 Canola cytosol 72.38 71.36
CDY50375 Canola cytosol, mitochondrion 72.38 71.36
CDY18015 Canola cytosol 72.38 71.36
Solyc06g009020.2.1 Tomato plastid 61.9 61.03
VIT_07s0005g00010.t01 Wine grape cytosol 61.9 60.75
PGSC0003DMT400037918 Potato cytosol 61.43 60.56
VIT_07s0005g00030.t01 Wine grape cytosol 60.48 59.35
Solyc06g009040.2.1 Tomato cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 59.52 58.96
PGSC0003DMT400029561 Potato cytosol 60.0 58.88
Solyc09g074850.2.1 Tomato cytosol 53.81 56.5
CDX80129 Canola cytosol 57.62 56.02
CDX95731 Canola cytosol 56.67 55.35
CDY53015 Canola cytosol 51.9 54.5
CDY07846 Canola cytosol 55.71 53.67
CDY37454 Canola cytosol, mitochondrion 59.05 49.4
CDX89927 Canola cytosol 59.05 49.01
CDY32486 Canola cytosol, mitochondrion 58.1 48.61
CDY71513 Canola plastid 58.1 46.21
CDX89147 Canola cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole 46.19 44.29
CDX93963 Canola cytosol 45.71 43.84
CDY43144 Canola cytosol, endoplasmic reticulum, mitochondrion, plastid 41.43 41.43
CDY28744 Canola cytosol, endoplasmic reticulum, mitochondrion, plastid 40.48 40.48
CDY29636 Canola cytosol 40.95 40.0
CDX97788 Canola cytosol 40.95 40.0
CDY37204 Canola cytosol 47.62 39.37
CDY23980 Canola cytosol 40.0 39.07
CDX84816 Canola cytosol 40.0 39.07
CDX85469 Canola cytosol, mitochondrion 40.0 39.07
CDY16947 Canola cytosol 39.52 38.97
CDX69395 Canola cytosol 39.52 38.97
CDY02726 Canola cytosol 38.57 37.85
CDY07850 Canola cytosol, plastid 59.05 37.24
CDY18136 Canola cytosol 58.57 36.94
CDX84815 Canola cytosol, endoplasmic reticulum 35.71 34.88
CDY23979 Canola endoplasmic reticulum 35.24 34.42
CDY02724 Canola cytosol, endoplasmic reticulum, plasma membrane, plastid 39.05 23.98
CDX89928 Canola endoplasmic reticulum 2.38 2.07
CDY18134 Canola nucleus 0.0 0.0
Protein Annotations
KEGG:00480+2.5.1.18KEGG:00980+2.5.1.18KEGG:00982+2.5.1.18KEGG:00983+2.5.1.18Gene3D:1.20.1050.10MapMan:18.8.1.5
Gene3D:3.40.30.10UniProt:A0A078FRC5EnsemblPlants:CDY15444ProteinID:CDY15444ProteinID:CDY15444.1GO:GO:0003674
GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00089611001InterPro:GST_CInterPro:GST_Phi_CInterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sfInterPro:Glutathione_S-Trfase_NInterPro:IPR004045InterPro:IPR010987PFAM:PF00043PFAM:PF02798
PFscan:PS50404PFscan:PS50405PANTHER:PTHR43900PANTHER:PTHR43900:SF7SUPFAM:SSF47616SUPFAM:SSF52833
InterPro:Thioredoxin-like_sfUniParc:UPI0002545AA8SEG:seg:::
Description
BnaA08g27280DBnaA08g27280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRC5]
Coordinates
chrLK032055:-:64555..65503
Molecular Weight (calculated)
23692.4 Da
IEP (calculated)
6.350
GRAVY (calculated)
-0.262
Length
210 amino acids
Sequence
(BLAST)
001: MAGIKVFGHP ASTATRRVLI ALHEKDLDFE LVHVELKDGE HKKEPFLSRN PFGKVPAFED GDFKLFESRA ITQYIAHEYA DKGNQLLSPG SKNMAILAMG
101: MEIEAHEFDS VASKLGWEQI FKNFFGLTTD QAVVKEEEVK LGKVLDNYEA RLGESKYLAS DHFTLVDLHH IPVIQYLLGT PTKKLFEERP HVSAWVADIT
201: SRPSSQKILL
Best Arabidopsis Sequence Match ( AT1G02930.1 )
(BLAST)
001: MAGIKVFGHP ASTATRRVLI ALHEKNVDFE FVHVELKDGE HKKEPFILRN PFGKVPAFED GDFKIFESRA ITQYIAHEFS DKGNNLLSTG KDMAIIAMGI
101: EIESHEFDPV GSKLVWEQVL KPLYGMTTDK TVVEEEEAKL AKVLDVYEHR LGESKYLASD HFTLVDLHTI PVIQYLLGTP TKKLFDERPH VSAWVADITS
201: RPSAQKVL
Arabidopsis Description
GSTF6Glutathione S-transferase F6 [Source:UniProtKB/Swiss-Prot;Acc:P42760]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.