Factsheet for Solyc06g009020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g009020.2.1
Solyc06g009040.2.1
Solyc09g074850.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02930.1	Solyc06g009020.2.1	AT1G02920.1	21798944
AT1G02930.1	Solyc06g009040.2.1	AT1G02920.1	21798944
AT1G02930.1	Solyc09g074850.2.1	AT1G02920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037918	Potato	cytosol	96.24	96.24
Solyc06g009040.2.1	Tomato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	83.1	83.49
VIT_07s0005g00010.t01	Wine grape	cytosol	67.14	66.82
Solyc09g074850.2.1	Tomato	cytosol	61.97	66.0
VIT_07s0005g00030.t01	Wine grape	cytosol	66.2	65.89
Bra018543.1-P	Field mustard	cytosol, mitochondrion	61.97	61.97
CDY65569	Canola	cytosol, mitochondrion	61.97	61.97
CDY15444	Canola	cytosol, mitochondrion	61.03	61.9
Bra030515.1-P	Field mustard	cytosol, mitochondrion	61.03	61.9
CDX97273	Canola	cytosol, mitochondrion	61.5	61.5
CDY18131	Canola	cytosol, mitochondrion	60.09	60.95
Bra036260.1-P	Field mustard	cytosol, mitochondrion	60.56	60.56
Bra004434.1-P	Field mustard	cytosol	56.81	60.5
CDY53015	Canola	cytosol	56.81	60.5
CDX89931	Canola	cytosol, mitochondrion	59.62	60.48
Bra033358.1-P	Field mustard	cytosol, mitochondrion	59.62	60.48
AT2G02930.1	Thale cress	cytosol, mitochondrion	60.09	60.38
Bra036259.1-P	Field mustard	cytosol, mitochondrion	60.09	60.09
KRH71552	Soybean	cytosol	61.5	60.09
AT4G02520.1	Thale cress	cytosol, mitochondrion	59.62	59.91
AT1G02920.1	Thale cress	cytosol	58.69	59.81
CDY22058	Canola	cytosol, mitochondrion	59.62	59.62
AT1G02930.1	Thale cress	cytosol	58.22	59.62
CDX80129	Canola	cytosol	60.09	59.26
CDY50374	Canola	cytosol, mitochondrion	59.15	59.15
CDX90934	Canola	cytosol, mitochondrion	58.69	58.69
CDY50375	Canola	cytosol, mitochondrion	58.22	58.22
CDX90933	Canola	cytosol	58.22	58.22
CDY18015	Canola	cytosol	58.22	58.22
CDY18016	Canola	cytosol, mitochondrion	58.22	58.22
Bra000875.1-P	Field mustard	cytosol	58.22	58.22
CDX95731	Canola	cytosol	58.69	58.14
Bra000876.1-P	Field mustard	cytosol, mitochondrion	57.75	57.75
Bra000460.1-P	Field mustard	cytosol	58.22	57.67
AT2G47730.2	Thale cress	plastid	62.44	50.57
CDY71513	Canola	plastid	59.15	47.73
CDY07846	Canola	cytosol	45.07	44.04
Bra024517.1-P	Field mustard	cytosol	36.62	43.82
Bra032578.1-P	Field mustard	cytosol	49.77	43.62
Solyc12g094430.1.1	Tomato	plastid	44.6	42.99
AT1G02950.5	Thale cress	cytosol	51.17	42.75
CDY32486	Canola	cytosol, mitochondrion	49.77	42.23
CDY37454	Canola	cytosol, mitochondrion	49.77	42.23
CDX89927	Canola	cytosol	49.77	41.9
Bra033359.1-P	Field mustard	endoplasmic reticulum	47.42	40.73
Bra033361.1-P	Field mustard	cytosol	35.21	40.11
AT1G02940.2	Thale cress	endoplasmic reticulum	47.89	36.3
Solyc02g081340.2.1	Tomato	cytosol, endoplasmic reticulum	38.5	35.65
CDY07850	Canola	cytosol, plastid	50.23	32.13
CDY18136	Canola	cytosol	49.3	31.53
Bra033360.1-P	Field mustard	endoplasmic reticulum	2.82	3.05
CDX89928	Canola	endoplasmic reticulum	2.82	2.48

Protein Annotations

KEGG:00480+2.5.1.18	KEGG:00980+2.5.1.18	KEGG:00982+2.5.1.18	KEGG:00983+2.5.1.18	Gene3D:1.20.1050.10	MapMan:18.8.1.5
Gene3D:3.40.30.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004364	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006749	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	InterPro:GST_C	InterPro:GST_Phi_C	InterPro:Glutathione-S-Trfase_C-like
InterPro:Glutathione-S-Trfase_C_sf	InterPro:Glutathione_S-Trfase_N	InterPro:IPR004045	InterPro:IPR010987	UniProt:K4C3T2	PFAM:PF00043
PFAM:PF02798	PFscan:PS50404	PFscan:PS50405	PANTHER:PTHR43900	PANTHER:PTHR43900:SF7	SUPFAM:SSF47616
SUPFAM:SSF52833	EnsemblPlantsGene:Solyc06g009020.2	EnsemblPlants:Solyc06g009020.2.1	InterPro:Thioredoxin-like_sf	UniParc:UPI0002766B06	:

Description

No Description!

Coordinates

chr6:+:2965668..2967884

Molecular Weight (calculated)

23724.8 Da

IEP (calculated)

6.403

GRAVY (calculated)

-0.168

Length

213 amino acids

Sequence
(BLAST)

001: MAIKVHGPMM SPAVMRVVAT LKEKDLDFEL VPVNMQAGDH KKEPFISLNP FGQVPAFEDG DLKLFESRAI TQYIAHTYAD KGNQLLPNDP KKMAVMSVWM
101: EVEAQKFDPI GSKLGFEIVI KPMLGMVTDD AVVAENEEKL GKLLDVYESR LKESKYLGGE SFTLADLHHA PSLHYLSGSK VKSLFDARPH VSAWVADILA
201: RPAWSKTIEL SKQ

Best Arabidopsis Sequence Match ( AT2G47730.1 )
(BLAST)

001: MGAIQARLPL FLSPPSIKHH TFLHSSSSNS NFKIRSNKSS SSSSSSIIMA SIKVHGVPMS TATMRVLATL YEKDLQFELI PVDMRAGAHK QEAHLALNPF
101: GQIPALEDGD LTLFESRAIT QYLAEEYSEK GEKLISQDCK KVKATTNVWL QVEGQQFDPN ASKLAFERVF KGMFGMTTDP AAVQELEGKL QKVLDVYEAR
201: LAKSEFLAGD SFTLADLHHL PAIHYLLGTD SKVLFDSRPK VSEWIKKISA RPAWAKVIDL QKQ

Arabidopsis Description

GSTF8Glutathione S-transferase F8, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q96266]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.