Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88663 | Canola | nucleus | 98.74 | 98.74 |
| AT5G58230.1 | Thale cress | nucleus | 63.36 | 95.05 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 60.06 | 90.09 |
| PGSC0003DMT400061016 | Potato | cytosol | 59.12 | 88.68 |
| KRH42369 | Soybean | nucleus | 59.12 | 88.47 |
| Solyc01g104510.2.1 | Tomato | nucleus | 58.8 | 88.21 |
| KRH58491 | Soybean | nucleus | 58.8 | 88.0 |
| CDY43875 | Canola | nucleus | 58.18 | 86.85 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 57.55 | 86.52 |
| CDY02805 | Canola | nucleus | 56.29 | 85.44 |
| CDY62688 | Canola | nucleus | 57.08 | 85.21 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 15.41 | 83.76 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 56.13 | 83.41 |
| Os03t0640100-01 | Rice | cytosol | 56.13 | 83.41 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 55.97 | 83.18 |
| TraesCSU01G072700.1 | Wheat | nucleus | 55.82 | 82.94 |
| Zm00001d033247_P001 | Maize | nucleus | 55.97 | 82.6 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 55.97 | 82.6 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 28.77 | 82.06 |
| CDY32715 | Canola | nucleus | 52.67 | 80.53 |
| Zm00001d013702_P001 | Maize | nucleus | 53.93 | 79.58 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 49.21 | 74.52 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 56.29 | 58.88 |
| CDY26787 | Canola | cytosol | 35.85 | 55.07 |
| CDY47479 | Canola | cytosol | 35.85 | 55.07 |
| CDY70131 | Canola | cytosol | 16.51 | 50.24 |
| CDX81933 | Canola | nucleus | 22.17 | 29.13 |
| CDY43523 | Canola | nucleus | 21.54 | 28.84 |
| CDY29763 | Canola | endoplasmic reticulum | 14.94 | 28.19 |
| CDY06779 | Canola | nucleus | 21.38 | 28.04 |
| CDY21661 | Canola | nucleus | 22.17 | 27.87 |
| CDY48711 | Canola | nucleus | 22.01 | 27.83 |
| CDY03358 | Canola | nucleus | 22.01 | 27.78 |
| CDY70287 | Canola | nucleus | 7.86 | 27.32 |
| CDY35867 | Canola | cytosol | 11.95 | 26.76 |
| CDX82696 | Canola | nucleus | 16.98 | 24.55 |
| CDX99799 | Canola | cytosol | 11.16 | 22.4 |
| CDY48712 | Canola | plastid | 16.51 | 22.29 |
| CDY03357 | Canola | plastid | 16.51 | 22.2 |
| CDY50786 | Canola | cytosol | 11.01 | 22.08 |
| CDX90175 | Canola | cytosol | 11.01 | 22.08 |
| CDY21659 | Canola | nucleus | 16.2 | 21.78 |
| CDY43325 | Canola | cytosol | 10.85 | 21.77 |
| CDX81935 | Canola | nucleus | 16.04 | 21.47 |
| CDY35872 | Canola | cytosol, nucleus, plastid | 11.48 | 21.47 |
| CDX82701 | Canola | nucleus | 12.74 | 20.88 |
Protein Annotations
| MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | Gene3D:3.30.70.1860 | MapMan:7.12.6.3.2 | GO:A0A078J3Z2 |
| UniProt:A0A078J3Z2 | EnsemblPlants:CDY58569 | ProteinID:CDY58569 | ProteinID:CDY58569.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| EnsemblPlantsGene:GSBRNA2T00024853001 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:IPR038409 |
| PFAM:PF00400 | PFAM:PF10674 | PFAM:PF12265 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EE4227 |
| InterPro:Uncharacterised_Ycf54 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| InterPro:Ycf54-like_sf | SEG:seg | : | : | : | : |
Description
BnaC03g12490DBnaC03g12490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J3Z2]
Coordinates
chrLK033679:-:26927..30165
Molecular Weight (calculated)
72223.7 Da
IEP (calculated)
4.691
GRAVY (calculated)
-0.499
Length
636 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDRDEPPGKD YSVQKMILGT HTSENEPNYL MIAQVQLPLD DTESEARQYD
101: DERSEFGGFG CATGKVQIIQ QINHEGEVNR ARYMPQNPFV IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLRLRGHSSE GYGLSWSKFK AGHLLSGSDD
201: AQICLWDINA TPKNKVIDAQ QIFKAHEGVV EDVAWHMSHE HLFGSVGDDQ YLLIWDLRSP SASKPIQSVV AHSMEVNCLA FNPINEWVVA TGSTDKTVKL
301: FDLRKLTSAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTAEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP IKAMWSVTGA LSVAVPTAAA FRPKPFLVSS NLLPNQTKKL HLSPPQPPAL SSHFSSSSFK TAATSVQQQS DDKKGEKSTK
501: YYFLVANAKF MLDEEEHFQE QLFERLRYYG ERDKEQDFWL VIEPKFLDKF PKLTQRLSRP AVALVSTNGP WITFMKLRLD RVLAESFEAA SLDEALASSP
601: TTLEFDQPGN WVAPYPKYEP GWWDTFLPKA KQESLA
101: DERSEFGGFG CATGKVQIIQ QINHEGEVNR ARYMPQNPFV IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLRLRGHSSE GYGLSWSKFK AGHLLSGSDD
201: AQICLWDINA TPKNKVIDAQ QIFKAHEGVV EDVAWHMSHE HLFGSVGDDQ YLLIWDLRSP SASKPIQSVV AHSMEVNCLA FNPINEWVVA TGSTDKTVKL
301: FDLRKLTSAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTAEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP IKAMWSVTGA LSVAVPTAAA FRPKPFLVSS NLLPNQTKKL HLSPPQPPAL SSHFSSSSFK TAATSVQQQS DDKKGEKSTK
501: YYFLVANAKF MLDEEEHFQE QLFERLRYYG ERDKEQDFWL VIEPKFLDKF PKLTQRLSRP AVALVSTNGP WITFMKLRLD RVLAESFEAA SLDEALASSP
601: TTLEFDQPGN WVAPYPKYEP GWWDTFLPKA KQESLA
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.