CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77427	Canola	nucleus	86.24	93.78
CDX77426	Canola	cytosol	35.86	68.44
AT3G24440.1	Thale cress	nucleus	63.37	68.11
GSMUA_Achr10P...	Banana	mitochondrion	14.99	45.97
KRH39246	Soybean	nucleus, plastid	41.42	41.17
Solyc05g018390.2.1	Tomato	nucleus	39.88	39.88
GSMUA_Achr4P01640_001	Banana	nucleus	39.57	39.81
KRH41601	Soybean	nucleus, plastid	39.57	39.26
KRH48444	Soybean	nucleus	41.58	37.41
KXG21293	Sorghum	cytosol	34.31	37.19
VIT_11s0016g04240.t01	Wine grape	nucleus	41.27	37.03
HORVU5Hr1G026240.2	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.05	36.46
CDY29247	Canola	cytosol, nucleus, plastid	21.95	35.95
KRH60306	Soybean	nucleus	40.03	35.92
Zm00001d024824_P001	Maize	cytosol	26.12	35.88
Os05t0145400-01	Rice	cytosol	33.54	35.75
TraesCS1D01G090400.1	Wheat	cytosol	33.54	35.28
TraesCS1A01G108900.1	Wheat	cytosol	32.92	35.26
CDY59604	Canola	nucleus	21.79	34.81
TraesCS1B01G108200.1	Wheat	cytosol	33.08	34.8
TraesCS5D01G109600.1	Wheat	nucleus	36.63	34.0
EES17116	Sorghum	nucleus	36.48	33.81
Os12t0533500-01	Rice	nucleus	36.94	33.8
TraesCS5A01G097100.1	Wheat	nucleus	36.32	33.72
TraesCS5B01G102800.1	Wheat	nucleus	36.32	33.72
Zm00001d041715_P003	Maize	nucleus	36.01	33.43
HORVU1Hr1G019570.1	Barley	nucleus	31.68	33.39
Zm00001d023897_P003	Maize	cytosol	36.48	32.78
CDY14184	Canola	cytosol	25.5	32.42
HORVU7Hr1G096840.1	Barley	plastid	36.63	31.18
PGSC0003DMT400070566	Potato	cytosol	16.69	31.03
CDY51654	Canola	cytosol	25.5	30.73
VIT_04s0008g04380.t01	Wine grape	cytosol	38.64	29.31
CDY03544	Canola	nucleus	27.36	28.37
CDY28168	Canola	nucleus	27.98	28.28
CDX68633	Canola	nucleus	27.05	28.18
GSMUA_Achr10P...	Banana	extracellular	10.36	28.15
CDX72220	Canola	nucleus	27.05	28.0
CDY11872	Canola	mitochondrion	23.03	26.19
CDX88618	Canola	mitochondrion	22.87	25.43
CDY47942	Canola	nucleus	21.79	25.04
CDY42262	Canola	nucleus	21.48	24.69

Protein Annotations

EnsemblPlants:CDY39555	EnsemblPlantsGene:GSBRNA2T00068101001	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD
PANTHER:PTHR21736	PANTHER:PTHR21736:SF17	PFAM:PF07227	PFscan:PS50853	ProteinID:CDY39555	ProteinID:CDY39555.1
SEG:seg	SUPFAM:SSF49265	UniParc:UPI0004EE4B70	UniProt:A0A078HM73	MapMan:12.3.3.1.2.2	:

Description

BnaC07g07230DBnaC07g07230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM73]

Coordinates

chrLK032451:+:304807..307189

Molecular Weight (calculated)

72270.7 Da

IEP (calculated)

4.819

GRAVY (calculated)

-0.509

Length

647 amino acids

Sequence
(BLAST)

001: MDTKSKISQS RKNHNKSSKK HDANKKHQQQ EDDVGITNSW ICKNASCRAN VPKDDSFCKR CSCCVCHSFD ENKDPSLWLV CESEKPNDVE FCGLSCHVEC
101: AFREDKVGVT SIGNLMKLDG CFCCYSCGKV SEILGCWKKQ LVAAKDARRR DVLCYRIEMS YRLLDGTCRF SELHEVVKAA KSMLEDEVGP LDGPSARTDR
201: GIVSRLPVAS DVQELCTSAI KMAEDWSANV ARDSIPAACR FHFEDVASTR VTLRLIELPS AEECGVTGYR LWCFKKGETP EDDQFLDLSR AERRILLADL
301: DPCKEYMFRV VSYTEAGCLG HSNARCVTKS VEILRDNSVE GRTKRRINVL GNDQASDREE KSSISSGFQI GQLGKYVELA EAQEDGLLDA FYDVDTDKSS
401: EPEEEVPPRR PLGFDLNVVS VPDLNEEFTQ PDSSGGEDNG VPLDSLAEAD VGNGNGNYND DDDTVSNGTQ KNNNCLVRSD GSGDDPEFDF LMTRKRKADS
501: NSHGSENNEC DSSPIDDTIE KCMKVVRWLE CEGHIEKTFR IRFLTWFGLS STAQEQSVVS TFVQTLEDDP SSLAEQLLHV FSDVISNKRP NNGSGSRFDL
601: KTLEGKHFAF LPCLCSYLLK LRGLELFALL CISLTMNSCY YLPAKFK

Best Arabidopsis Sequence Match ( AT3G24440.1 )
(BLAST)

001: MDSSSTKSKI SHSRKTNKKS NKKHESNGKQ QQQQDVDGGG GCLRSSWICK NASCRANVPK EDSFCKRCSC CVCHNFDENK DPSLWLVCEP EKSDDVEFCG
101: LSCHIECAFR EVKVGVIALG NLMKLDGCFC CYSCGKVSQI LGCWKKQLVA AKEARRRDGL CYRIDLGYRL LNGTSRFSEL HEIVRAAKSM LEDEVGPLDG
201: PTARTDRGIV SRLPVAANVQ ELCTSAIKKA GELSANAGRD LVPAACRFHF EDIAPKQVTL RLIELPSAVE YDVKGYKLWY FKKGEMPEDD LFVDCSRTER
301: RMVISDLEPC TEYTFRVVSY TEAGIFGHSN AMCFTKSVEI LKPVDGKEKR TIDLVGNAQP SDREEKSSIS SRFQIGQLGK YVQLAEAQEE GLLEAFYNVD
401: TEKICEPPEE ELPPRRPHGF DLNVVSVPDL NEEFTPPDSS GGEDNGVPLN SLAEADGGDH DDNCDDAVSN GRRKNNNDCL VISDGSGDDT GFDFLMTRKR
501: KAISDSNDSE NHECDSSSID DTLEKCVKVI RWLEREGHIK TTFRVRFLTW FSMSSTAQEQ SVVSTFVQTL EDDPGSLAGQ LVDAFTDVVS TKRPNNGVMT
601: SH

Arabidopsis Description

VIL1VIN3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.