CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010297.1-P	Field mustard	nucleus	92.47	90.16
CDY14184	Canola	cytosol	73.24	89.78
CDY51654	Canola	cytosol	65.06	75.61
CDY28168	Canola	nucleus	73.4	71.56
CDX68633	Canola	nucleus	69.39	69.73
CDX72220	Canola	nucleus	69.39	69.28
AT4G30200.2	Thale cress	nucleus	70.19	61.34
CDY29247	Canola	cytosol, nucleus, plastid	38.78	61.27
CDY59604	Canola	nucleus	38.78	59.75
VIT_11s0052g00830.t01	Wine grape	nucleus	51.6	43.63
KRH02856	Soybean	nucleus	51.12	43.28
KRH19033	Soybean	nucleus	50.64	42.93
CDY47942	Canola	nucleus	37.5	41.56
CDY42262	Canola	nucleus	37.02	41.03
Solyc07g018270.2.1	Tomato	cytosol	48.56	41.0
CDY11872	Canola	mitochondrion	36.22	39.72
CDX88618	Canola	mitochondrion	35.9	38.49
GSMUA_Achr3P05080_001	Banana	cytosol	38.94	37.97
GSMUA_Achr9P13690_001	Banana	plasma membrane	40.06	37.65
GSMUA_Achr4P02170_001	Banana	cytosol	38.78	36.83
GSMUA_Achr5P16400_001	Banana	cytosol	33.65	36.4
PGSC0003DMT400019884	Potato	cytosol	19.39	32.79
Os02t0152500-01	Rice	nucleus	38.3	31.91
Zm00001d053875_P001	Maize	cytosol, plastid	38.46	31.58
KXG29488	Sorghum	nucleus	37.98	31.14
CDX77426	Canola	cytosol	16.67	30.68
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	36.86	30.63
TraesCS6A01G123400.1	Wheat	nucleus	36.54	30.4
TraesCS6B01G151600.2	Wheat	nucleus	36.38	30.27
TraesCS6D01G113600.1	Wheat	nucleus	36.38	30.27
CDX77427	Canola	nucleus	28.04	29.41
Zm00001d015293_P015	Maize	nucleus, plastid	38.62	28.52
HORVU7Hr1G099250.1	Barley	cytosol	35.9	27.65
CDY39555	Canola	nucleus	28.37	27.36
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	35.74	27.2
TraesCS7A01G433000.1	Wheat	cytosol	35.42	27.02

Protein Annotations

MapMan:12.3.3.1.2.2	Gene3D:2.60.40.10	EnsemblPlants:CDY03544	ProteinID:CDY03544	ProteinID:CDY03544.1	InterPro:FN3_dom
InterPro:FN3_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00116255001	InterPro:IPR003961
InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD	PFAM:PF00041	PFAM:PF07227	PFscan:PS50853
PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	SMART:SM00060	SUPFAM:SSF49265	UniParc:UPI0004EEFD48	SEG:seg

Description

BnaC03g68030D

Coordinates

chrLK031944:+:121605..124545

Molecular Weight (calculated)

69152.0 Da

IEP (calculated)

7.635

GRAVY (calculated)

-0.497

Length

624 amino acids

Sequence
(BLAST)

001: MSVEEKRQLV YELSKQSSHL APEVLQAWSR QEILQILCAE MGKERKYTGL TKVKIIETLM KIVSEKNAGE CDENKKKRDS DCCLPVQRSA KRPRKVDNPT
101: RYVAPTSNNN ASGEEKTTYC NNLACRAVMR QEDTFCRRCS CCICRKYDEN KDPSLWLTCS SDPPFEGGSC GSSCHLECAF ESEKSGLAKR SEECCFYCVS
201: CGKPNSLLEC WKKQLTIAKE ARRVDILCYR LLLVQKLVKG SSKYRNVCEA VEKAVKCLEA DVGPLTMKMG RGIVNRLNSG PDVHKLCSSA LESLQTLETK
301: PPEISADTAT TVPPTKIRFE DVNATSLTVI LASNEVASPA NIVHYSIWHR KVTEKEYQEK STCTLFTPNA RFVVSGLAPA SEYCFKVVSF SGTRELGVDV
401: INVLTRGPEE RSESPLTNCS TLSSNPSSAE AESNNGKKDS PSTEENAAKR TVEPDLVEAE KNVEGVVLLD EVEEEAVQDK NVAVTTANGN SSPVTPFKSD
501: QTKNRQVRNK KLVKDNGNNG DHHSANGGAE SGLEHCVKII RQLECSGHIE KDFRQKFLTW YSLRATPQES RVVKIFIDTF TDDPVALAEQ LVHTFSDRVS
601: MKRSAIGGGA SAVVQSGFCM KLWH

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.