CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 3
golgi 2
plasma membrane 2
endoplasmic reticulum 3
vacuole 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006824.1-P	Field mustard	nucleus	77.32	92.21
CDY11872	Canola	mitochondrion	82.65	84.53
CDY42262	Canola	nucleus	66.84	69.09
CDY47942	Canola	nucleus	64.6	66.79
AT5G57380.1	Thale cress	nucleus	63.23	59.35
CDY29247	Canola	cytosol, nucleus, plastid	30.58	45.06
CDY59604	Canola	nucleus	30.58	43.95
CDY14184	Canola	cytosol	34.88	39.88
CDY51654	Canola	cytosol	35.4	38.36
CDY03544	Canola	nucleus	38.49	35.9
CDX72220	Canola	nucleus	38.32	35.68
CDX68633	Canola	nucleus	37.8	35.43
CDY28168	Canola	nucleus	38.32	34.84
VIT_11s0052g00830.t01	Wine grape	nucleus	43.47	34.28
KRH02856	Soybean	nucleus	42.44	33.51
KRH19033	Soybean	nucleus	42.1	33.29
Solyc07g018270.2.1	Tomato	cytosol	41.07	32.34
GSMUA_Achr4P02170_001	Banana	cytosol	35.4	31.35
GSMUA_Achr3P05080_001	Banana	cytosol	34.36	31.25
CDX77426	Canola	cytosol	17.7	30.38
GSMUA_Achr9P13690_001	Banana	plasma membrane	34.54	30.27
GSMUA_Achr5P16400_001	Banana	cytosol	29.73	29.98
Os02t0152500-01	Rice	nucleus	34.71	26.97
Zm00001d053875_P001	Maize	cytosol, plastid	34.54	26.45
KXG29488	Sorghum	nucleus	34.54	26.41
CDX77427	Canola	nucleus	25.95	25.38
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	32.47	25.17
TraesCS6B01G151600.2	Wheat	nucleus	31.62	24.53
TraesCS6A01G123400.1	Wheat	nucleus	31.44	24.4
TraesCS6D01G113600.1	Wheat	nucleus	31.44	24.4
Zm00001d015293_P015	Maize	nucleus, plastid	35.4	24.38
TraesCS7A01G433000.1	Wheat	cytosol	33.33	23.72
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	33.16	23.54
PGSC0003DMT400019884	Potato	cytosol	14.78	23.31
HORVU7Hr1G099250.1	Barley	cytosol	32.13	23.09
CDY39555	Canola	nucleus	25.43	22.87

Protein Annotations

EnsemblPlants:CDX88618	EnsemblPlantsGene:GSBRNA2T00148653001	InterPro:Oberon_PHD	ncoils:Coil	PANTHER:PTHR21736	PANTHER:PTHR21736:SF13
PFAM:PF07227	ProteinID:CDX88618	ProteinID:CDX88618.1	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0004EDC8FE
MapMan:12.3.3.1.2.2	:	:	:	:	:

Description

BnaA03g10310D

Coordinates

chrLK031856:-:199054..201447

Molecular Weight (calculated)

65623.2 Da

IEP (calculated)

7.981

GRAVY (calculated)

-0.563

Length

582 amino acids

Sequence
(BLAST)

001: MFILYMFFKR MRASWFCILA LSKIWRFDSN VGPEEDMDPS SFQGVVCTEF PKKKGLSVSE RRELIHALSK QPEEASELLN SWSRDEIMKI ICAEMGKERK
101: YTGLAKPKLI QNLLNLVSRP LGETSCLDRK ISRRKRQKTT TSYIICCENL ACRAALGSED TFCRRCSCCV CQNFDDNKDP SLWIACEGCG LSCHLECAFK
201: EDGYGIGCND DVRGLDGRFH CVFCGKDNDL LGCWRKQVKV AKETRRVDVL CYRVCLGQKM LRGTRRYQNL LELMDEAVKK LEGDVGPLVS WEMKMARGIV
301: NRFDSGSQVQ KLCSLAMEAL DKMVSPPPES VSRQGDKMSA RVEEVQARSV NVRLDSEEPS SSSQNRVTGV KDDGEEAGNR QRHLTNSSSG LCSSNPSLAE
401: DESNNVSKSC CKENSDNNNA EHYSAGEVES EIEEERVLKR KVNEIERRDL FVITPCKRDA FNGKQGGNKR SKSRTSTKKP ETNVAENGVG GDKDLGHVVK
501: TTRCLEQEGH IDKSFRESFL TWYSLRATHR EVKVVKVFVE TFKDDLSSLG QQLVDTFSEC IQSKRSSTTG VVPAGICLKF WH

Best Arabidopsis Sequence Match ( AT5G57380.1 )
(BLAST)

001: MQAASLSKIW RFDGNVGPEN MDSSSFEDNE CIETCKPNVL NVSERRELIH ALSNQPEEAS ELLNSWSRNE IMKIICAEMG KERKYTGLNK PKLIENLLNL
101: VSRPLGETSC SDRRNSRKKE KKMIGYIICC ENLACRAALG CDDTFCRRCS CCICQKFDDN KDPSLWLTCD ACGSSCHLEC GLKQDRYGIG SDDLDGRFYC
201: AYCGKDNDLL GCWRKQVKVA KETRRVDVLC YRLSLGQKLL RGTTKYRNLL ELMDEAVKKL EGDVGPLSGW AMKMARGIVN RLSSGVHVQK LCSQAMEALD
301: KVVSPSESVS GQGDKMTVRV EEIQARSVTV RVDSEEPSSS TQNKITGFRL FCRKSKDEEC SSQGNCVVYL PETTSAIQGL EPDTEFCLRV VSFNEEGDLD
401: ESELRFTTLK DDGDEAGDQQ SPLTNSSSGL CSNPSLPEDE SNNVNKSCSK GNGDKDNTEH CSAGEVESEL EEERLVKRKA NKIDGRDLLV TPCKRDIYKG
501: KQGGNKRFKS RTVSLNEKPE INNAANGVGD KDLGHIVKTI RCLEEEGHID KSFRERFLTW YSLRATHREV RVVKIFVETF MEDLSSLGQQ LVDTFSESIL
601: SKRSSTNGVV PAGICLKLWH

Arabidopsis Description

VIN3VIN3 [Source:UniProtKB/TrEMBL;Acc:A0A178UF19]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.