CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28168	Canola	nucleus	89.53	86.88
CDY14184	Canola	cytosol	63.93	78.0
CDY51654	Canola	cytosol	64.41	74.49
CDX72220	Canola	nucleus	71.18	70.72
CDY03544	Canola	nucleus	69.73	69.39
AT4G30200.2	Thale cress	nucleus	70.69	61.48
CDY29247	Canola	cytosol, nucleus, plastid	38.97	61.27
CDY59604	Canola	nucleus	38.97	59.75
VIT_11s0052g00830.t01	Wine grape	nucleus	50.89	42.82
KRH02856	Soybean	nucleus	49.44	41.66
Solyc07g018270.2.1	Tomato	cytosol	49.28	41.41
KRH19033	Soybean	nucleus	48.79	41.17
CDY47942	Canola	nucleus	37.04	40.85
CDY42262	Canola	nucleus	36.55	40.32
CDY11872	Canola	mitochondrion	35.75	39.02
GSMUA_Achr3P05080_001	Banana	cytosol	39.29	38.12
GSMUA_Achr5P16400_001	Banana	cytosol	35.27	37.95
CDX88618	Canola	mitochondrion	35.43	37.8
GSMUA_Achr9P13690_001	Banana	plasma membrane	39.61	37.05
GSMUA_Achr4P02170_001	Banana	cytosol	38.81	36.68
KXG29488	Sorghum	nucleus	39.45	32.19
Os02t0152500-01	Rice	nucleus	38.65	32.04
Zm00001d053875_P001	Maize	cytosol, plastid	39.13	31.97
CDX77426	Canola	cytosol	17.39	31.86
PGSC0003DMT400019884	Potato	cytosol	18.36	30.89
HORVU6Hr1G022770.6	Barley	cytosol, nucleus, plastid	37.36	30.89
TraesCS6D01G113600.1	Wheat	nucleus	37.04	30.67
TraesCS6A01G123400.1	Wheat	nucleus	36.72	30.4
TraesCS6B01G151600.2	Wheat	nucleus	36.72	30.4
CDX77427	Canola	nucleus	28.02	29.24
Zm00001d015293_P015	Maize	nucleus, plastid	39.77	29.23
HORVU7Hr1G099250.1	Barley	cytosol	36.07	27.65
CDY39555	Canola	nucleus	28.18	27.05
TraesCS7D01G424600.1	Wheat	cytosol, nucleus, plasma membrane	35.43	26.83
TraesCS7A01G433000.1	Wheat	cytosol	34.78	26.41

Protein Annotations

EnsemblPlants:CDX68633	EnsemblPlantsGene:GSBRNA2T00130286001	Gene3D:2.60.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:FN3_dom	InterPro:FN3_sf	InterPro:IPR003961	InterPro:IPR013783	InterPro:Ig-like_fold	InterPro:Oberon_PHD
PANTHER:PTHR21736	PANTHER:PTHR21736:SF13	PFAM:PF00041	PFAM:PF07227	PFscan:PS50853	ProteinID:CDX68633
ProteinID:CDX68633.1	SEG:seg	SUPFAM:SSF49265	UniParc:UPI0004EDFB65	MapMan:12.3.3.1.2.2	:

Description

BnaC01g08200D

Coordinates

chrLK031789:-:392048..395552

Molecular Weight (calculated)

69521.2 Da

IEP (calculated)

7.542

GRAVY (calculated)

-0.553

Length

621 amino acids

Sequence
(BLAST)

001: MSVDEKRQLV YDLSKQSQLA TEVLQAWSRQ EILQILCAEM GKERKYTGLT KVKIIEALLK LVSEKNSGDY DENNKKKKKN RDSDCLPVQR NTKRQRKVDE
101: PSRYVAPTSN NNSSGSCNNA IYCNNLACRA ILREGDSFCR RCSCCICRKY DDNKDPSLWL TCSSDPPFEG DSCGFSCHLE CAFKSEKSGL KESEGGCCCF
201: YCVSCGKPNS LLECWKKQLT IARETRRVDV LCYRLLLVQK LTKGSSKYRN LCEVVDEAVK SLEADVGPLT GLPLKMGRGI VNRLQSGPDV QKLCSSALES
301: LETPHEVAAL PSPSSSKMQH DTATTVSTKI RFEDVNATSL TVILASNEVT SPSNIVHYSI WHRMVTEKEY QEKSTCTLFT PNARFVVSGL APASEYCFKV
401: VSYSGTRELG VDEISVLTRN EEERSESPLT NCSTLSSNPS VEAESNNAYI VPHNEIKDSP TDENAAKRTT EIVQTEKNIE EETVPDKNRE TLNPVTTTNL
501: LPITPFRSDQ TKNRQARKGK SVKENGDHHS ANGGSESGLE HCVKIIRQLE CSGHIEKEFR QKFLTWYGLR ATPQEIRVVK IFIDTFADDP VALAEQLVHS
601: FSDRVSSKPV VQSGFCMKLW H

Best Arabidopsis Sequence Match ( AT4G30200.3 )
(BLAST)

001: MDSSLDGAAG DSSKCSEMSV DEKRQLVYEL SKQSHLAAEV LQAWSRQEIL QILCAEMGKE RKYTGLTKVK IIETLLKIVS EKNSGECEGK KRDSDCLPIQ
101: RNTKRQRKVD NPSRYVIPAT NIVTSNNASG SCSSVNTKGE STTIYCKNLA CRAVLRQEDS FCRRCSCCIC RKYDDNKDPS LWLTCSSDPP FEGESCGFSC
201: HLECAFNTEK SGLGKDKQSE GCCFYCVSCG KANSLLECWK KQLTIAKETR RVEVLCYRLF LVQKLLKSST KYRNLCEVVD EAVKTLEADV GPLTGLPMKM
301: GRGIVNRLHS GPDVQKLCSS ALESLETIAT TPPDVAALPS PRSSKMQQDT ATTGSTKIRF EDVNATSLTV VLASNEIPSP PNIVHYSIWH RKVPEKDYPE
401: KSTCTLFIPN TRFVVSGLAP ASEYCFKVVS YSGTREMGVD EINVLTRSAE EGANCSSAVE RSVSPLTNCS TLSSNPSSVE AESNNDYIVP KKPSSKNEDN
501: NSPSVDESAA KRMKRTTDSD IVQIEKDVEQ IVLLDDEEQE AVLDKTESET PVVVTTKSLV GNRNSSDASL PITPFRSDEI KNRQARIEIS MKDNCNNGDH
601: SANGGTESGL EHCVKIIRQL ECSGHIDKNF RQKFLTWYSL RATSQEIRVV KIFIDTFIDD PMALAEQLID TFDDRVSIKR SAVGGSGASA VVPSGFCMKL
701: WH

Arabidopsis Description

VIL2VIN3-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.